WormBase Tree Display for Gene: WBGene00000101
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| WBGene00000101 | SMap | S_parent | Sequence | D1022 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | aka-1 | |||||||
| Sequence_name | D1022.7 | ||||||||
| Molecular_name | D1022.7a | ||||||||
| D1022.7a.1 | |||||||||
| CE02581 | |||||||||
| D1022.7b | |||||||||
| CE31775 | |||||||||
| D1022.7c | |||||||||
| CE31776 | |||||||||
| D1022.7b.1 | |||||||||
| D1022.7c.1 | |||||||||
| Other_name | kap-1 | Accession_evidence | EMBL | AF045926 | |||||
| CELE_D1022.7 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | aka-1 | ||||||||
| DB_info | Database | AceView | gene | 2H764 | |||||
| WormQTL | gene | WBGene00000101 | |||||||
| WormFlux | gene | WBGene00000101 | |||||||
| NDB | locus_tag | CELE_D1022.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000101|UniProtKB=H2KZI9 | |||||||
| family | PTHR46319 | ||||||||
| NCBI | gene | 174216 | |||||||
| RefSeq | protein | NM_063164.9 | |||||||
| NM_001393118.1 | |||||||||
| NM_001026874.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF324904 | |||||||
| TrEMBL | UniProtAcc | Q8MQ92 | |||||||
| H2KZI9 | |||||||||
| Q18930 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KZI9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aka | ||||||||
| Allele (80) | |||||||||
| Strain | WBStrain00035791 | ||||||||
| WBStrain00036979 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022319 | ||||||||
| 00022320 | |||||||||
| 00022321 | |||||||||
| 00022322 | |||||||||
| 00062856 | |||||||||
| 00062857 | |||||||||
| 00106785 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00003084 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00014019 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | aka-1 encodes an A kinase anchor protein that has mutiple isoforms, all of which have a zinc-finger domain of the FYVE type; interacts with KIN-2 in vitro. | Paper_evidence | WBPaper00003087 | |||||
| WBPaper00003913 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in endosomal transport. Predicted to be located in early endosome membrane. Is an ortholog of human ZFYVE9 (zinc finger FYVE-type containing 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D1022.7a | |||||||
| D1022.7b | |||||||||
| D1022.7c | |||||||||
| Corresponding_transcript | D1022.7a.1 | ||||||||
| D1022.7b.1 | |||||||||
| D1022.7c.1 | |||||||||
| Other_sequence | JI164979.1 | ||||||||
| Acan_isotig08405 | |||||||||
| Tcir_isotig27428 | |||||||||
| Oden_isotig09024 | |||||||||
| Oden_isotig09025 | |||||||||
| CBC15545_1 | |||||||||
| Oden_isotig09026 | |||||||||
| CBC00827_1 | |||||||||
| Dviv_isotig17764 | |||||||||
| Associated_feature (17) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00079014 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012508 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00079013 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078211 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043355 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010533 | ||||||||
| Expr1030051 | |||||||||
| Expr1147334 | |||||||||
| Expr2009280 | |||||||||
| Expr2027517 | |||||||||
| Drives_construct | WBCnstr00037732 | ||||||||
| Construct_product | WBCnstr00037732 | ||||||||
| Antibody | WBAntibody00001823 | ||||||||
| Microarray_results (40) | |||||||||
| Expression_cluster (142) | |||||||||
| Interaction (77) | |||||||||
| Map_info | Map | II | Position | 0.5032 | Error | 2.2e-05 | |||
| Positive | Positive_clone | D1022 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4151 | |||||||
| 4390 | |||||||||
| 4797 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | There are two kap-1 genes. The CGC_approved one is connected to F08F8.3a/b, the non_CGC_approved one (from the original GenBank/EMBL AF045926) is an other_name of aka-1 and is linked to D1022.7a/b/c [JAH][030120 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
