WormBase Tree Display for Gene: WBGene00000094
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| WBGene00000094 | SMap | S_parent | Sequence | F09E5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | agt-2 | |||||||
| Sequence_name | F09E5.13 | ||||||||
| Molecular_name | F09E5.13 | ||||||||
| F09E5.13.1 | |||||||||
| CE02608 | |||||||||
| Other_name | cAGT-2 | ||||||||
| F09E5.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F09E5.13 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | agt-2 | ||||||||
| DB_info | Database | AceView | gene | 2F660 | |||||
| WormQTL | gene | WBGene00000094 | |||||||
| WormFlux | gene | WBGene00000094 | |||||||
| NDB | locus_tag | CELE_F09E5.13 | |||||||
| NCBI | gene | 184244 | |||||||
| RefSeq | protein | NM_062607.5 | |||||||
| TrEMBL | UniProtAcc | Q19263 | |||||||
| UniProt_GCRP | UniProtAcc | Q19263 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | agt | ||||||||
| Allele (20) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00131645 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| WBGene00057388 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| FL83_06037 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_006005 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g4475 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | agt-2 encodes a paralog of the DNA repair enzyme O6-Alkylguanine DNA-alkyltransferase (AGT); AGT-2 has AGT biochemical activity and is expressed at all developmental stages. | Paper_evidence | WBPaper00004946 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in OLL; PVD; germ line; and neurons based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and daf-12 based on tiling array; RNA-seq; and microarray studies. Is affected by eight chemicals including rotenone; Alovudine; and stavudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F09E5.13 | |||||||
| Corresponding_transcript | F09E5.13.1 | ||||||||
| Associated_feature | WBsf650060 | ||||||||
| WBsf655356 | |||||||||
| WBsf223038 | |||||||||
| WBsf223039 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044126 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00025043 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012976 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062505 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030710 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061968 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027262 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019560 | ||||||||
| Expr1030044 | |||||||||
| Expr1148090 | |||||||||
| Expr2009266 | |||||||||
| Expr2027503 | |||||||||
| Drives_construct | WBCnstr00037739 | ||||||||
| Construct_product | WBCnstr00037739 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (122) | |||||||||
| Interaction | WBInteraction000227880 | ||||||||
| WBInteraction000228165 | |||||||||
| WBInteraction000231265 | |||||||||
| WBInteraction000240029 | |||||||||
| WBInteraction000246045 | |||||||||
| WBInteraction000292230 | |||||||||
| WBInteraction000314787 | |||||||||
| WBInteraction000359606 | |||||||||
| WBInteraction000438935 | |||||||||
| WBInteraction000449144 | |||||||||
| Map_info | Map | II | Position | -1.78658 | Error | 0.000174 | |||
| Positive | Positive_clone | F09E5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004946 | ||||||||
| WBPaper00056720 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
