WormBase Tree Display for Gene: WBGene00021496
expand all nodes | collapse all nodes | view schema
WBGene00021496 | SMap | S_parent | Sequence | Y40C5A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | daf-42 | Person_evidence | WBPerson360 | |||||
WBPerson31239 | |||||||||
Sequence_name | Y40C5A.3 | ||||||||
Molecular_name (51) | |||||||||
Other_name | CELE_Y40C5A.3 | Accession_evidence | NDB | BX284604 | |||||
Public_name | daf-42 | ||||||||
DB_info | Database | AceView | gene | 4I100 | |||||
WormQTL | gene | WBGene00021496 | |||||||
WormFlux | gene | WBGene00021496 | |||||||
NDB | locus_tag | CELE_Y40C5A.3 | |||||||
NCBI | gene | 177507 | |||||||
RefSeq | protein | NM_001307262.1 | |||||||
NM_001307254.1 | |||||||||
NM_001307257.1 | |||||||||
NM_001307256.1 | |||||||||
NM_001268364.2 | |||||||||
NM_001307248.1 | |||||||||
NM_001307260.1 | |||||||||
NM_001268363.2 | |||||||||
NM_001307258.1 | |||||||||
NM_001307253.1 | |||||||||
NM_001307250.1 | |||||||||
NM_001307249.1 | |||||||||
NM_001307251.1 | |||||||||
NM_001307252.1 | |||||||||
NM_001307259.1 | |||||||||
NM_001307255.1 | |||||||||
NM_001307261.1 | |||||||||
TREEFAM | TREEFAM_ID | TF342754 | |||||||
TrEMBL | UniProtAcc (17) | ||||||||
UniProt_GCRP | UniProtAcc | W6RTL3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 20 May 2019 14:10:26 | WBPerson1983 | Name_change | CGC_name | daf-42 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | daf | ||||||||
Allele (142) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (19) | |||||||||
Structured_description | Automated_description | Enriched in several structures, including ABalaappppa; ABalapaappa; ABalapapapa; ABalapappaa; and anterior ganglion (post) based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by four chemicals including Zidovudine; sucrose; and stearic acid based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (5) | |||||||||
Experimental_info | RNAi_result | WBRNAi00020449 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020450 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020451 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056325 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020447 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059962 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059961 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059963 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020446 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059964 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr16428 | ||||||||
Expr1024795 | |||||||||
Expr1039394 | |||||||||
Expr1159813 | |||||||||
Expr2007417 | |||||||||
Expr2025653 | |||||||||
Drives_construct | WBCnstr00043013 | ||||||||
Construct_product | WBCnstr00043013 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (108) | |||||||||
Map_info | Map | IV | Position | 3.32865 | |||||
Positive | Positive_clone | Y40C5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00057489 | ||||||||
WBPaper00062835 | |||||||||
WBPaper00065378 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |