WormBase Tree Display for Gene: WBGene00016173
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WBGene00016173 | SMap | S_parent | Sequence | C27H5 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | fust-1 | Person_evidence | WBPerson1352 | |||
Sequence_name | C27H5.3 | ||||||
Molecular_name | C27H5.3a | ||||||
C27H5.3a.1 | |||||||
CE27099 | |||||||
C27H5.3b | |||||||
CE51847 | |||||||
C27H5.3b.1 | |||||||
C27H5.3b.2 | |||||||
Other_name | CELE_C27H5.3 | Accession_evidence | NDB | BX284602 | |||
Public_name | fust-1 | ||||||
DB_info | Database | AceView | gene | 2H445 | |||
WormQTL | gene | WBGene00016173 | |||||
WormFlux | gene | WBGene00016173 | |||||
NDB | locus_tag | CELE_C27H5.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00016173|UniProtKB=Q18265 | |||||
family | PTHR23238 | ||||||
NCBI | gene | 174175 | |||||
RefSeq | protein | NM_063082.7 | |||||
NM_001381492.1 | |||||||
TrEMBL | UniProtAcc | Q18265 | |||||
A0A1N7SYQ6 | |||||||
UniProt_GCRP | UniProtAcc | Q18265 | |||||
OMIM | gene | 133450 | |||||
137070 | |||||||
601574 | |||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fust | ||||||
Allele (42) | |||||||
Strain | WBStrain00001567 | ||||||
WBStrain00047288 | |||||||
WBStrain00047287 | |||||||
WBStrain00047289 | |||||||
WBStrain00050865 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (11) | |||||||
Ortholog (47) | |||||||
Structured_description | Automated_description | Predicted to enable RNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in gonad; head; intestinal cell; neurons; and tail. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 6; connective tissue cancer (multiple); and essential tremor 4. Is an ortholog of human FUS (FUS RNA binding protein). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:1289 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||
DOID:0111431 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||
DOID:0060198 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||
DOID:4549 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11547) | ||||
DOID:1115 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||
DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||
DOID:3382 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4010) | ||||
DOID:3371 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11547) | ||||
DOID:3369 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3508) | ||||
Molecular_info | Corresponding_CDS | C27H5.3a | |||||
C27H5.3b | |||||||
Corresponding_transcript | C27H5.3a.1 | ||||||
C27H5.3b.1 | |||||||
C27H5.3b.2 | |||||||
Other_sequence (37) | |||||||
Associated_feature | WBsf644354 | ||||||
WBsf988367 | |||||||
WBsf221563 | |||||||
Experimental_info | RNAi_result | WBRNAi00090580 | Inferred_automatically | RNAi_primary | |||
WBRNAi00011275 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00083277 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076171 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00041374 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (11) | |||||||
Drives_construct | WBCnstr00002407 | ||||||
WBCnstr00028273 | |||||||
WBCnstr00042661 | |||||||
WBCnstr00042662 | |||||||
WBCnstr00042663 | |||||||
Construct_product | WBCnstr00028273 | ||||||
WBCnstr00042661 | |||||||
WBCnstr00042662 | |||||||
WBCnstr00042663 | |||||||
Regulate_expr_cluster | WBPaper00066004:fust-1(csb21)_downregulated | ||||||
WBPaper00066004:fust-1(csb21)_upregulated | |||||||
Microarray_results (19) | |||||||
Expression_cluster (109) | |||||||
Interaction (197) | |||||||
Map_info | Map | II | Position | 0.496031 | Error | 0.000218 | |
Positive | Positive_clone | C27H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00039140 | |||||||
WBPaper00043234 | |||||||
WBPaper00046432 | |||||||
WBPaper00052702 | |||||||
WBPaper00053121 | |||||||
WBPaper00053757 | |||||||
WBPaper00055090 | |||||||
WBPaper00058116 | |||||||
WBPaper00062110 | |||||||
WBPaper00063415 | |||||||
WBPaper00063450 | |||||||
WBPaper00064663 | |||||||
WBPaper00066004 | |||||||
WBPaper00066342 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |