WormBase Tree Display for Gene: WBGene00008062
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WBGene00008062 | SMap | S_parent | Sequence | C41G7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | set-32 | Person_evidence | WBPerson1730 | |||||
WBPerson268 | |||||||||
WBPerson632 | |||||||||
Sequence_name | C41G7.4 | ||||||||
Molecular_name | C41G7.4 | ||||||||
C41G7.4.1 | |||||||||
CE42716 | |||||||||
Other_name | tag-328 | Paper_evidence | |||||||
Person_evidence | WBPerson201 | ||||||||
CELE_C41G7.4 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | set-32 | ||||||||
DB_info | Database | AceView | gene | 1K97 | |||||
WormQTL | gene | WBGene00008062 | |||||||
WormFlux | gene | WBGene00008062 | |||||||
NDB | locus_tag | CELE_C41G7.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00008062|UniProtKB=Q93368 | |||||||
family | PTHR47250 | ||||||||
NCBI | gene | 183391 | |||||||
RefSeq | protein | NM_060128.3 | |||||||
TREEFAM | TREEFAM_ID | TF321419 | |||||||
TrEMBL | UniProtAcc | Q93368 | |||||||
UniProt_GCRP | UniProtAcc | Q93368 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-32 | ||||
Other_name | tag-328 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | set | ||||||||
Allele (42) | |||||||||
Strain | WBStrain00036209 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (53) | |||||||||
Paralog (20) | |||||||||
Structured_description | Concise_description | set-32 encodes a divergent histone H3 lysine-9 (H3K9) methyltransferase homolog with a SET domain; SET-32 has no obvious non-nematode orthologs, but several paralogs (SET-6, SET-13, SET-15, SET-19, SET-20, and SET-21); set-32(ok1457) has no obvious mutant phenotype, and SET-32 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00030864 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including Z1.p; germ line; germline precursor cell; head mesodermal cell; and male distal tip cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; glp-1; and eat-2 based on microarray and RNA-seq studies. Is affected by thirteen chemicals including manganese chloride; Alovudine; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SET domain superfamily and SET domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C41G7.4 | |||||||
Corresponding_CDS_history | C41G7.4:wp191 | ||||||||
Corresponding_transcript | C41G7.4.1 | ||||||||
Other_sequence | CBC11117_1 | ||||||||
Associated_feature | WBsf218298 | ||||||||
Experimental_info | RNAi_result | WBRNAi00091522 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00115387 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00042318 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00029735 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062516 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr14250 | ||||||||
Expr14373 | |||||||||
Expr16244 | |||||||||
Expr16245 | |||||||||
Expr1012882 | |||||||||
Expr1033500 | |||||||||
Expr1146307 | |||||||||
Expr2015777 | |||||||||
Expr2034010 | |||||||||
Drives_construct | WBCnstr00033266 | ||||||||
WBCnstr00042858 | |||||||||
Construct_product | WBCnstr00033266 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (119) | |||||||||
Interaction | WBInteraction000238787 | ||||||||
WBInteraction000290578 | |||||||||
WBInteraction000313800 | |||||||||
WBInteraction000359288 | |||||||||
WBInteraction000473842 | |||||||||
WBInteraction000521420 | |||||||||
Map_info | Map | I | Position | 3.78782 | Error | 0.001312 | |||
Positive | Positive_clone | C41G7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5155 | |||||||
4148 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00017807 | ||||||||
WBPaper00030864 | |||||||||
WBPaper00031554 | |||||||||
WBPaper00036383 | |||||||||
WBPaper00038372 | |||||||||
WBPaper00050362 | |||||||||
WBPaper00050819 | |||||||||
WBPaper00051187 | |||||||||
WBPaper00052454 | |||||||||
WBPaper00054282 | |||||||||
WBPaper00055316 | |||||||||
WBPaper00055783 | |||||||||
WBPaper00055784 | |||||||||
WBPaper00056401 | |||||||||
WBPaper00056632 | |||||||||
WBPaper00058061 | |||||||||
WBPaper00058067 | |||||||||
WBPaper00058071 | |||||||||
WBPaper00059753 | |||||||||
WBPaper00060098 | |||||||||
WBPaper00060971 | |||||||||
WBPaper00061061 | |||||||||
WBPaper00061162 | |||||||||
WBPaper00062457 | |||||||||
WBPaper00063401 | |||||||||
WBPaper00063410 | |||||||||
WBPaper00063882 | |||||||||
WBPaper00064543 | |||||||||
WBPaper00065308 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |