WormBase Tree Display for Gene: WBGene00006603
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WBGene00006603 | SMap | S_parent | Sequence | F19H8 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | tps | ||||||
Allele (165) | |||||||
Strain | WBStrain00031474 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (12) | |||||||
Ortholog (37) | |||||||
Paralog | WBGene00001649 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WBGene00006602 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | tps-2 encodes one of two trehalose-6-phosphate synthase proteins in C. elegans, and RNAi of both enzymes leads to a more than 90% reduction decrease in trehalose levels, but does not appear to affect viability or development; the tps-2 mRNA is expressed throughout development. | Paper_evidence | WBPaper00006140 | |||
WBPaper00017649 | |||||||
WBPaper00019120 | |||||||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity. Predicted to contribute to trehalose-phosphatase activity. Predicted to be involved in trehalose biosynthetic process and trehalose metabolism in response to stress. Predicted to be part of alpha,alpha-trehalose-phosphate synthase complex (UDP-forming). Expressed in hypodermis. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F19H8.1a | |||||
F19H8.1b | |||||||
Corresponding_CDS_history | F19H8.1:wp91 | ||||||
F19H8.1:wp132 | |||||||
Corresponding_transcript | F19H8.1a.1 | ||||||
F19H8.1b.1 | |||||||
Other_sequence (111) | |||||||
Associated_feature (16) | |||||||
Experimental_info | RNAi_result (12) | ||||||
Expr_pattern (12) | |||||||
Drives_construct | WBCnstr00003736 | ||||||
WBCnstr00015345 | |||||||
WBCnstr00015346 | |||||||
WBCnstr00034276 | |||||||
WBCnstr00042530 | |||||||
Construct_product | WBCnstr00034276 | ||||||
Microarray_results (23) | |||||||
Expression_cluster (174) | |||||||
Interaction (122) | |||||||
Map_info | Map | II | Position | 23.148 | Error | 0.005869 | |
Positive | Positive_clone | F19H8 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4735 | |||||
5024 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00006140 | ||||||
WBPaper00017649 | |||||||
WBPaper00019120 | |||||||
WBPaper00024542 | |||||||
WBPaper00025231 | |||||||
WBPaper00026837 | |||||||
WBPaper00033843 | |||||||
WBPaper00036280 | |||||||
WBPaper00036530 | |||||||
WBPaper00046159 | |||||||
WBPaper00049227 | |||||||
WBPaper00051763 | |||||||
WBPaper00053236 | |||||||
WBPaper00057153 | |||||||
WBPaper00061131 | |||||||
WBPaper00061238 | |||||||
WBPaper00065331 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |