WormBase Tree Display for Gene: WBGene00004460
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| WBGene00004460 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C30C11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-3 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | C30C11.2 | ||||||||
| Molecular_name | C30C11.2 | ||||||||
| C30C11.2.1 | |||||||||
| CE00101 | |||||||||
| Other_name | CELE_C30C11.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rpn-3 | ||||||||
| DB_info | Database | AceView | gene | 3J537 | |||||
| WormQTL | gene | WBGene00004460 | |||||||
| WormFlux | gene | WBGene00004460 | |||||||
| NDB | locus_tag | CELE_C30C11.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004460|UniProtKB=Q04908 | |||||||
| family | PTHR10758 | ||||||||
| NCBI | gene | 176196 | |||||||
| RefSeq | protein | NM_066468.5 | |||||||
| SwissProt | UniProtAcc | Q04908 | |||||||
| TREEFAM | TREEFAM_ID | TF106110 | |||||||
| UniProt_GCRP | UniProtAcc | Q04908 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (21) | |||||||||
| Strain | WBStrain00001197 | ||||||||
| WBStrain00047450 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00052645 | ||||||||
| 00052646 | |||||||||
| 00052647 | |||||||||
| 00052648 | |||||||||
| 00052649 | |||||||||
| 00052650 | |||||||||
| 00112935 | |||||||||
| 00112936 | |||||||||
| 00112937 | |||||||||
| Contained_in_operon | CEOP3528 | ||||||||
| Ortholog (35) | |||||||||
| Paralog (2) | |||||||||
| Structured_description | Automated_description | Predicted to enable enzyme regulator activity. Involved in programmed cell death involved in cell development. Predicted to be part of proteasome regulatory particle, lid subcomplex. Expressed in head; intestine; and tail. Is an ortholog of human PSMD3 (proteasome 26S subunit, non-ATPase 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C30C11.2 | |||||||
| Corresponding_transcript | C30C11.2.1 | ||||||||
| Other_sequence (100) | |||||||||
| Associated_feature | WBsf645418 | ||||||||
| WBsf645419 | |||||||||
| WBsf659288 | |||||||||
| WBsf225418 | |||||||||
| WBsf225419 | |||||||||
| WBsf225420 | |||||||||
| WBsf225421 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Chronogram1395 | ||||||||
| Chronogram1679 | |||||||||
| Expr5382 | |||||||||
| Expr1013089 | |||||||||
| Expr1032263 | |||||||||
| Expr1145554 | |||||||||
| Expr2015491 | |||||||||
| Expr2033726 | |||||||||
| Drives_construct | WBCnstr00002090 | ||||||||
| WBCnstr00035468 | |||||||||
| Construct_product | WBCnstr00035468 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (163) | |||||||||
| Interaction (162) | |||||||||
| Map_info | Map | III | Position | -0.259374 | Error | 0.000552 | |||
| Positive | Positive_clone | C30C11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00022302 | ||||||||
| WBPaper00029221 | |||||||||
| WBPaper00030965 | |||||||||
| WBPaper00031865 | |||||||||
| WBPaper00032236 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00045116 | |||||||||
| WBPaper00046476 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00063122 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
