WormBase Tree Display for Gene: WBGene00003983
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| WBGene00003983 | SMap | S_parent | Sequence | Y46G5A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pes-10 | Person_evidence | WBPerson266 | |||||
| Sequence_name | Y46G5A.27 | ||||||||
| Molecular_name (3) | |||||||||
| Other_name | CELE_Y46G5A.27 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | pes-10 | ||||||||
| DB_info | Database | AceView | gene | 2N136 | |||||
| WormQTL | gene | WBGene00003983 | |||||||
| WormFlux | gene | WBGene00003983 | |||||||
| NDB | locus_tag | CELE_Y46G5A.27 | |||||||
| NCBI | gene | 174920 | |||||||
| RefSeq | protein | NM_064331.7 | |||||||
| SwissProt | UniProtAcc | P41991 | |||||||
| TREEFAM | TREEFAM_ID | TF322543 | |||||||
| UniProt_GCRP | UniProtAcc | P41991 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pes | ||||||||
| Allele (58) | |||||||||
| Legacy_information | [C.elegansII] pk74 : Tc1 insertion, no known phenotype. No maternal transcripts, zygotic transcripts present transiently in each somatic lineage from 4-cell stage; pes-10:lacZ expression similar. [Seydoux and Fire 1994; PD] | ||||||||
| Strain (18) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00045723 | ||||||||
| 00045724 | |||||||||
| 00045725 | |||||||||
| 00045726 | |||||||||
| 00045727 | |||||||||
| 00045728 | |||||||||
| 00045729 | |||||||||
| 00045730 | |||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00012916 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013278 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007769 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011049 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Located in cytoplasm and nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46G5A.27 | |||||||
| Corresponding_transcript | Y46G5A.27.1 | ||||||||
| Associated_feature | WBsf650674 | ||||||||
| WBsf650675 | |||||||||
| WBsf224114 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056686 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr565 | ||||||||
| Expr586 | |||||||||
| Expr1010766 | |||||||||
| Expr1031903 | |||||||||
| Expr1160155 | |||||||||
| Expr2014831 | |||||||||
| Expr2033065 | |||||||||
| Drives_construct (30) | |||||||||
| Construct_product | WBCnstr00000234 | ||||||||
| WBCnstr00017356 | |||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (142) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | II | Position | 11.8113 | Error | 0.091506 | |||
| Positive | Positive_clone | Y46G5A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002044 | ||||||||
| WBPaper00002526 | |||||||||
| WBPaper00002661 | |||||||||
| WBPaper00002801 | |||||||||
| WBPaper00003015 | |||||||||
| WBPaper00003339 | |||||||||
| WBPaper00003645 | |||||||||
| WBPaper00003945 | |||||||||
| WBPaper00004351 | |||||||||
| WBPaper00004890 | |||||||||
| WBPaper00005224 | |||||||||
| WBPaper00005433 | |||||||||
| WBPaper00005605 | |||||||||
| WBPaper00005725 | |||||||||
| WBPaper00005842 | |||||||||
| WBPaper00006181 | |||||||||
| WBPaper00006411 | |||||||||
| WBPaper00006475 | |||||||||
| WBPaper00010189 | |||||||||
| WBPaper00010715 | |||||||||
| WBPaper00010780 | |||||||||
| WBPaper00010806 | |||||||||
| WBPaper00010932 | |||||||||
| WBPaper00011170 | |||||||||
| WBPaper00011469 | |||||||||
| WBPaper00012708 | |||||||||
| WBPaper00014753 | |||||||||
| WBPaper00014754 | |||||||||
| WBPaper00014920 | |||||||||
| WBPaper00014991 | |||||||||
| WBPaper00015011 | |||||||||
| WBPaper00015155 | |||||||||
| WBPaper00015183 | |||||||||
| WBPaper00015385 | |||||||||
| WBPaper00015606 | |||||||||
| WBPaper00015737 | |||||||||
| WBPaper00016781 | |||||||||
| WBPaper00016784 | |||||||||
| WBPaper00017585 | |||||||||
| WBPaper00017586 | |||||||||
| WBPaper00017667 | |||||||||
| WBPaper00018007 | |||||||||
| WBPaper00018412 | |||||||||
| WBPaper00018824 | |||||||||
| WBPaper00018951 | |||||||||
| WBPaper00018974 | |||||||||
| WBPaper00021850 | |||||||||
| WBPaper00022508 | |||||||||
| WBPaper00022790 | |||||||||
| WBPaper00022956 | |||||||||
| WBPaper00023576 | |||||||||
| WBPaper00023764 | |||||||||
| WBPaper00023814 | |||||||||
| WBPaper00024228 | |||||||||
| WBPaper00024309 | |||||||||
| WBPaper00026049 | |||||||||
| WBPaper00027298 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00027547 | |||||||||
| WBPaper00028054 | |||||||||
| WBPaper00029033 | |||||||||
| WBPaper00034924 | |||||||||
| WBPaper00035355 | |||||||||
| WBPaper00039671 | |||||||||
| WBPaper00043989 | |||||||||
| WBPaper00061130 | |||||||||
| WBPaper00061786 | |||||||||
| WBPaper00064660 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | This gene was previously connected to F56G4.3 but this may have been in error. The new sequence connection (to Y46G5A.27) is based on details in an EMBL entry. [krb 030512] | Accession_evidence | EMBL | U15304 | |||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
