WormBase Tree Display for Gene: WBGene00001972
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| WBGene00001972 | SMap | S_parent | Sequence | F47D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hmg-1.2 | |||||||
| Sequence_name | F47D12.4 | ||||||||
| Molecular_name (9) | |||||||||
| Other_name | son-1 | CGC_data_submission | |||||||
| CELE_F47D12.4 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | hmg-1.2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hmg | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00001623 | ||||||||
| WBStrain00030872 | |||||||||
| WBStrain00030873 | |||||||||
| WBStrain00030879 | |||||||||
| WBStrain00036586 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (61) | |||||||||
| Paralog | WBGene00001973 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00001974 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008081 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012209 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022182 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enables transcription cis-regulatory region binding activity. Involved in several processes, including gonad development; positive regulation of transcription by RNA polymerase II; and vulval development. Located in nucleus. Expressed in several structures, including tail. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; cerebral infarction; and syndromic microphthalmia 13. Is an ortholog of human HMGB3 (high mobility group box 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:6000 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||
| DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
| DOID:0111811 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5004) | ||||||
| DOID:3526 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
| DOID:13378 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
| DOID:418 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
| Molecular_info | Corresponding_CDS | F47D12.4a | |||||||
| F47D12.4b | |||||||||
| F47D12.4c | |||||||||
| Corresponding_transcript | F47D12.4a.1 | ||||||||
| F47D12.4b.1 | |||||||||
| F47D12.4c.1 | |||||||||
| Other_sequence (117) | |||||||||
| Associated_feature (13) | |||||||||
| Transcription_factor | WBTranscriptionFactor000385 | ||||||||
| Experimental_info | RNAi_result (45) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00002462 | ||||||||
| WBCnstr00002481 | |||||||||
| WBCnstr00003263 | |||||||||
| WBCnstr00012419 | |||||||||
| WBCnstr00015261 | |||||||||
| WBCnstr00017071 | |||||||||
| WBCnstr00019876 | |||||||||
| WBCnstr00036551 | |||||||||
| Construct_product | WBCnstr00012419 | ||||||||
| WBCnstr00019997 | |||||||||
| WBCnstr00019999 | |||||||||
| WBCnstr00036551 | |||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (166) | |||||||||
| Interaction (312) | |||||||||
| WBProcess | WBbiopr:00000071 | ||||||||
| WBbiopr:00000072 | |||||||||
| Map_info | Map | III | Position | -1.40577 | Error | 0.000741 | |||
| Positive | Positive_clone | F47D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4334 | |||||||
| 4407 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003453 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00030511 | |||||||||
| WBPaper00032575 | |||||||||
| WBPaper00032967 | |||||||||
| WBPaper00033954 | |||||||||
| WBPaper00034515 | |||||||||
| WBPaper00036514 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041799 | |||||||||
| WBPaper00045125 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061708 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
