WormBase Tree Display for Gene: WBGene00001664
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WBGene00001664 | SMap | S_parent | Sequence | F38E1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | gpa-2 | Person_evidence | WBPerson625 | |||||
Sequence_name | F38E1.5 | ||||||||
Molecular_name | F38E1.5 | ||||||||
F38E1.5.1 | |||||||||
CE04523 | |||||||||
Other_name | CELE_F38E1.5 | Accession_evidence | NDB | BX284605 | |||||
Public_name | gpa-2 | ||||||||
DB_info | Database | AceView | gene | 5I853 | |||||
WormQTL | gene | WBGene00001664 | |||||||
WormFlux | gene | WBGene00001664 | |||||||
NDB | locus_tag | CELE_F38E1.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001664|UniProtKB=P22454 | |||||||
family | PTHR10218 | ||||||||
NCBI | gene | 179219 | |||||||
RefSeq | protein | NM_072756.5 | |||||||
SwissProt | UniProtAcc | P22454 | |||||||
UniProt_GCRP | UniProtAcc | P22454 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gpa | ||||||||
Allele (41) | |||||||||
Legacy_information | [C.elegansII] pk19, pk2, pk23, pk24, pk16. Tc1 insertion, also excision derivatives: no obvious phenotype, some reduction in dauer formation, stronger with gpa-3(O). Cloned: gpa-2:lacZ expressed in phasmid neurons, some nerve ring neurons, PVT, sphincter. [Lochrie et al. 1991; PS; NL] | ||||||||
Strain | WBStrain00028899 | ||||||||
WBStrain00028902 | |||||||||
WBStrain00007863 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (25) | |||||||||
Ortholog (45) | |||||||||
Paralog (21) | |||||||||
Structured_description | Concise_description | gpa-2 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that is involved in dauer formation and chemotaxis to water-soluble odorants; it is expressed in the phasmid neurons PHA and PHB, three pharyngeal neurons, one interneuron, three pairs of head neurons, and the anal sphincter muscle. | Curator_confirmed | WBPerson48 | |||||
WBPerson567 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Involved in several processes, including defense response to Gram-negative bacterium; olfactory learning; and positive regulation of gene expression. Located in axon; neuronal cell body; and non-motile cilium. Expressed in anal sphincter muscle; ganglia; and pharyngeal cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (3) | |||||||||
Experimental_info | RNAi_result | WBRNAi00103344 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046709 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103347 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014559 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014563 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046710 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr538 | ||||||||
Expr539 | |||||||||
Expr3065 | |||||||||
Expr1023128 | |||||||||
Expr1150590 | |||||||||
Expr2012191 | |||||||||
Expr2030427 | |||||||||
Marker43 | |||||||||
Drives_construct | WBCnstr00001699 | ||||||||
WBCnstr00004639 | |||||||||
WBCnstr00004642 | |||||||||
WBCnstr00012427 | |||||||||
WBCnstr00012428 | |||||||||
WBCnstr00036791 | |||||||||
Construct_product | WBCnstr00001699 | ||||||||
WBCnstr00004642 | |||||||||
WBCnstr00012427 | |||||||||
WBCnstr00012428 | |||||||||
WBCnstr00036791 | |||||||||
Antibody | WBAntibody00000769 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (118) | |||||||||
Interaction (17) | |||||||||
Anatomy_function | WBbtf0865 | ||||||||
WBbtf0866 | |||||||||
Map_info | Map | V | Position | 1.34551 | Error | 0.005648 | |||
Positive | Positive_clone | F38E1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
RP#G3/2 | |||||||||
Mapping_data | Multi_point | 4368 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001350 | ||||||||
WBPaper00001401 | |||||||||
WBPaper00001617 | |||||||||
WBPaper00001672 | |||||||||
WBPaper00001739 | |||||||||
WBPaper00001751 | |||||||||
WBPaper00001784 | |||||||||
WBPaper00001799 | |||||||||
WBPaper00001897 | |||||||||
WBPaper00002006 | |||||||||
WBPaper00002314 | |||||||||
WBPaper00002415 | |||||||||
WBPaper00002627 | |||||||||
WBPaper00002707 | |||||||||
WBPaper00002902 | |||||||||
WBPaper00003019 | |||||||||
WBPaper00003024 | |||||||||
WBPaper00003465 | |||||||||
WBPaper00003659 | |||||||||
WBPaper00003824 | |||||||||
WBPaper00003894 | |||||||||
WBPaper00004366 | |||||||||
WBPaper00005620 | |||||||||
WBPaper00005965 | |||||||||
WBPaper00006103 | |||||||||
WBPaper00006194 | |||||||||
WBPaper00006267 | |||||||||
WBPaper00010093 | |||||||||
WBPaper00011673 | |||||||||
WBPaper00011793 | |||||||||
WBPaper00011930 | |||||||||
WBPaper00014412 | |||||||||
WBPaper00014614 | |||||||||
WBPaper00014617 | |||||||||
WBPaper00014628 | |||||||||
WBPaper00014676 | |||||||||
WBPaper00014678 | |||||||||
WBPaper00014679 | |||||||||
WBPaper00014754 | |||||||||
WBPaper00014801 | |||||||||
WBPaper00015087 | |||||||||
WBPaper00015144 | |||||||||
WBPaper00015215 | |||||||||
WBPaper00015326 | |||||||||
WBPaper00015440 | |||||||||
WBPaper00015629 | |||||||||
WBPaper00018001 | |||||||||
WBPaper00018927 | |||||||||
WBPaper00019252 | |||||||||
WBPaper00020886 | |||||||||
WBPaper00022160 | |||||||||
WBPaper00022435 | |||||||||
WBPaper00023450 | |||||||||
WBPaper00024365 | |||||||||
WBPaper00024393 | |||||||||
WBPaper00025472 | |||||||||
WBPaper00028339 | |||||||||
WBPaper00028950 | |||||||||
WBPaper00029015 | |||||||||
WBPaper00029025 | |||||||||
WBPaper00031936 | |||||||||
WBPaper00035128 | |||||||||
WBPaper00035254 | |||||||||
WBPaper00039392 | |||||||||
WBPaper00040144 | |||||||||
WBPaper00040879 | |||||||||
WBPaper00043908 | |||||||||
WBPaper00044991 | |||||||||
WBPaper00045859 | |||||||||
WBPaper00053566 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |