WormBase Tree Display for Gene: WBGene00001663
expand all nodes | collapse all nodes | view schema
WBGene00001663 | SMap | S_parent | Sequence | T19C4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 5L656 | |||||
WormQTL | gene | WBGene00001663 | |||||||
WormFlux | gene | WBGene00001663 | |||||||
NDB | locus_tag | CELE_T19C4.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001663|UniProtKB=P28051 | |||||||
family | PTHR10218 | ||||||||
NCBI | gene | 179546 | |||||||
RefSeq | protein | NM_001129546.4 | |||||||
NM_073439.3 | |||||||||
SwissProt | UniProtAcc | P28051 | |||||||
TrEMBL | UniProtAcc | B2D6M7 | |||||||
UniProt_GCRP | UniProtAcc | P28051 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gpa | ||||||||
Allele (53) | |||||||||
Legacy_information | [C.elegansII] pk1 : Tc1 insertion. Also excision derivative, no detectable phenotype. Cloned: 48% identity to GPA-3; gpa-1:lacZ expressed in some amphid and phasmid neurons, spicular neurons, some anterior pharyngeal cells. [Lochrie et al. 1991; PS; NL] | ||||||||
Strain | WBStrain00028898 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Ortholog (46) | |||||||||
Paralog (21) | |||||||||
Structured_description | Concise_description | gpa-1 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that is involved in chemotaxis to water-soluble odorants; it is expressed in sensory neurons and in the spicule and phasmid neurons of the male tail. | Curator_confirmed | WBPerson48 | |||||
WBPerson567 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Expressed in several structures, including SPD; chemosensory neurons; head mesodermal cell; pharyngeal neurons; and postcloacal sensillum. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T19C4.6a | |||||||
T19C4.6b | |||||||||
Corresponding_transcript | T19C4.6a.1 | ||||||||
T19C4.6b.1 | |||||||||
Other_sequence | Oden_isotig14911 | ||||||||
Dviv_isotig33463 | |||||||||
JI238621.1 | |||||||||
Oden_isotig14910 | |||||||||
JO473508.1 | |||||||||
Associated_feature | WBsf669360 | ||||||||
WBsf1001286 | |||||||||
WBsf1001287 | |||||||||
WBsf1020415 | |||||||||
WBsf1020416 | |||||||||
Experimental_info | RNAi_result | WBRNAi00053517 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027599 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00018833 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr522 | ||||||||
Expr1303 | |||||||||
Expr15370 | |||||||||
Expr1025482 | |||||||||
Expr1157085 | |||||||||
Expr2012190 | |||||||||
Expr2030426 | |||||||||
Drives_construct | WBCnstr00001684 | ||||||||
WBCnstr00004644 | |||||||||
WBCnstr00004645 | |||||||||
WBCnstr00004648 | |||||||||
WBCnstr00036792 | |||||||||
Construct_product | WBCnstr00001681 | ||||||||
WBCnstr00001684 | |||||||||
WBCnstr00010199 | |||||||||
WBCnstr00036792 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (149) | |||||||||
Interaction (27) | |||||||||
WBProcess | WBbiopr:00000017 | ||||||||
Map_info | Map | V | Position | 2.96783 | Error | 0.001182 | |||
Positive | Positive_clone | PS#25A12 | |||||||
T19C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001401 | ||||||||
WBPaper00001617 | |||||||||
WBPaper00001672 | |||||||||
WBPaper00001784 | |||||||||
WBPaper00001799 | |||||||||
WBPaper00002314 | |||||||||
WBPaper00002903 | |||||||||
WBPaper00003453 | |||||||||
WBPaper00003465 | |||||||||
WBPaper00003659 | |||||||||
WBPaper00004366 | |||||||||
WBPaper00006103 | |||||||||
WBPaper00006193 | |||||||||
WBPaper00006194 | |||||||||
WBPaper00006465 | |||||||||
WBPaper00011663 | |||||||||
WBPaper00011793 | |||||||||
WBPaper00014412 | |||||||||
WBPaper00014614 | |||||||||
WBPaper00014628 | |||||||||
WBPaper00014676 | |||||||||
WBPaper00014754 | |||||||||
WBPaper00014801 | |||||||||
WBPaper00015087 | |||||||||
WBPaper00015629 | |||||||||
WBPaper00018938 | |||||||||
WBPaper00022401 | |||||||||
WBPaper00022403 | |||||||||
WBPaper00022803 | |||||||||
WBPaper00023067 | |||||||||
WBPaper00024449 | |||||||||
WBPaper00024990 | |||||||||
WBPaper00025102 | |||||||||
WBPaper00025339 | |||||||||
WBPaper00027029 | |||||||||
WBPaper00028339 | |||||||||
WBPaper00028950 | |||||||||
WBPaper00029015 | |||||||||
WBPaper00029025 | |||||||||
WBPaper00031303 | |||||||||
WBPaper00031420 | |||||||||
WBPaper00031936 | |||||||||
WBPaper00035128 | |||||||||
WBPaper00036207 | |||||||||
WBPaper00040144 | |||||||||
WBPaper00040879 | |||||||||
WBPaper00043908 | |||||||||
WBPaper00063944 | |||||||||
WBPaper00064634 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |