WormBase Tree Display for Gene: WBGene00000608
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| WBGene00000608 | SMap | S_parent | Sequence | ZK1193 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-19 | Person_evidence | WBPerson345 | |||||
| Sequence_name | ZK1193.1 | ||||||||
| Molecular_name | ZK1193.1 | ||||||||
| ZK1193.1.1 | |||||||||
| CE05126 | |||||||||
| Other_name | col19 | Accession_evidence | EMBL | M25481 | |||||
| CELE_ZK1193.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | col-19 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00000608 | |||||
| WormFlux | gene | WBGene00000608 | |||||||
| NDB | locus_tag | CELE_ZK1193.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000608|UniProtKB=P18835 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 180397 | |||||||
| RefSeq | protein | NM_001038488.6 | |||||||
| SwissProt | UniProtAcc | P18835 | |||||||
| TREEFAM | TREEFAM_ID | TF319043 | |||||||
| UniProt_GCRP | UniProtAcc | P18835 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (25) | |||||||||
| Legacy_information | [C.elegansII] NMK. Transcript present in dauer, adult;not detected in egg or L4. Encodes collagen,col-8 family. [Cox and Hirsh 1985; Liu et al. 1995; VT] | ||||||||
| Strain | WBStrain00007918 | ||||||||
| WBStrain00007932 | |||||||||
| WBStrain00007933 | |||||||||
| WBStrain00033323 | |||||||||
| WBStrain00034928 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (50) | |||||||||
| Paralog (165) | |||||||||
| Structured_description | Concise_description | col-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals. | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00002222 | |||||||||
| WBPaper00005747 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 01 Sep 2004 00:00:00 | ||||||||
| Automated_description | A structural constituent of collagen and cuticulin-based cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in alae of collagen and cuticulin-based cuticle extracellular matrix and annuli extracellular matrix. Expressed in cuticle; hyp7 syncytium; syncytium; vulva; and in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK1193.1 | |||||||
| Corresponding_CDS_history | ZK1193.1a:wp145 | ||||||||
| ZK1193.1b:wp145 | |||||||||
| Corresponding_transcript | ZK1193.1.1 | ||||||||
| Other_sequence (62) | |||||||||
| Associated_feature | WBsf235261 | ||||||||
| WBsf235262 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern (13) | |||||||||
| Drives_construct (40) | |||||||||
| Construct_product | WBCnstr00000750 | ||||||||
| WBCnstr00004851 | |||||||||
| WBCnstr00010258 | |||||||||
| WBCnstr00011689 | |||||||||
| WBCnstr00012421 | |||||||||
| WBCnstr00037431 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (272) | |||||||||
| Interaction (298) | |||||||||
| Map_info (3) | |||||||||
| Reference | WBPaper00000748 | ||||||||
| WBPaper00001099 | |||||||||
| WBPaper00001146 | |||||||||
| WBPaper00001322 | |||||||||
| WBPaper00001392 | |||||||||
| WBPaper00001515 | |||||||||
| WBPaper00001621 | |||||||||
| WBPaper00001835 | |||||||||
| WBPaper00001918 | |||||||||
| WBPaper00001927 | |||||||||
| WBPaper00002222 | |||||||||
| WBPaper00002223 | |||||||||
| WBPaper00003119 | |||||||||
| WBPaper00005201 | |||||||||
| WBPaper00005747 | |||||||||
| WBPaper00006387 | |||||||||
| WBPaper00011068 | |||||||||
| WBPaper00012566 | |||||||||
| WBPaper00012681 | |||||||||
| WBPaper00013735 | |||||||||
| WBPaper00014038 | |||||||||
| WBPaper00014087 | |||||||||
| WBPaper00014292 | |||||||||
| WBPaper00014311 | |||||||||
| WBPaper00015201 | |||||||||
| WBPaper00015364 | |||||||||
| WBPaper00015492 | |||||||||
| WBPaper00020865 | |||||||||
| WBPaper00022194 | |||||||||
| WBPaper00022319 | |||||||||
| WBPaper00024429 | |||||||||
| WBPaper00024579 | |||||||||
| WBPaper00025088 | |||||||||
| WBPaper00026716 | |||||||||
| WBPaper00026926 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00029208 | |||||||||
| WBPaper00031885 | |||||||||
| WBPaper00033690 | |||||||||
| WBPaper00034343 | |||||||||
| WBPaper00036519 | |||||||||
| WBPaper00036739 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043623 | |||||||||
| WBPaper00043705 | |||||||||
| WBPaper00048192 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056839 | |||||||||
| WBPaper00057159 | |||||||||
| WBPaper00057877 | |||||||||
| WBPaper00059169 | |||||||||
| WBPaper00059191 | |||||||||
| WBPaper00059347 | |||||||||
| WBPaper00060685 | |||||||||
| WBPaper00060921 | |||||||||
| WBPaper00060970 | |||||||||
| WBPaper00061220 | |||||||||
| WBPaper00061786 | |||||||||
| WBPaper00062097 | |||||||||
| WBPaper00062653 | |||||||||
| WBPaper00063186 | |||||||||
| WBPaper00063212 | |||||||||
| WBPaper00063976 | |||||||||
| WBPaper00064354 | |||||||||
| WBPaper00064435 | |||||||||
| WBPaper00066105 | |||||||||
| WBPaper00066191 | |||||||||
| WBPaper00066263 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
