WormBase Tree Display for Gene: WBGene00000606
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| WBGene00000606 | SMap | S_parent | Sequence | F11G11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-17 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F11G11.10 | ||||||||
| Molecular_name | F11G11.10 | ||||||||
| F11G11.10.1 | |||||||||
| CE31783 | |||||||||
| Other_name | CELE_F11G11.10 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | col-17 | ||||||||
| DB_info | Database | AceView | gene | 2F156 | |||||
| WormQTL | gene | WBGene00000606 | |||||||
| WormFlux | gene | WBGene00000606 | |||||||
| NDB | locus_tag | CELE_F11G11.10 | |||||||
| NCBI | gene | 173839 | |||||||
| RefSeq | protein | NM_062477.8 | |||||||
| TrEMBL | UniProtAcc | P91248 | |||||||
| UniProt_GCRP | UniProtAcc | P91248 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (21) | |||||||||
| Legacy_information | [C.elegansII] NMK. Transcript present in dauer, L4, probably absent from adult; not detected in egg. [Cox and Hirsh 1985; Liu et al. 1995; VT] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00050353 | ||||||||
| Ortholog | WBGene00270814 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | |||||
| FL83_05943 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00001918 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F11G11.10 | |||||||
| Corresponding_CDS_history | F11G11.10:wp83 | ||||||||
| Corresponding_transcript | F11G11.10.1 | ||||||||
| Other_sequence (127) | |||||||||
| Associated_feature | WBsf987727 | ||||||||
| WBsf987728 | |||||||||
| WBsf1012145 | |||||||||
| WBsf222964 | |||||||||
| Experimental_info | RNAi_result (5) | ||||||||
| Expr_pattern | Expr760 | ||||||||
| Expr1014605 | |||||||||
| Expr1030352 | |||||||||
| Expr1148353 | |||||||||
| Expr2010374 | |||||||||
| Drives_construct | WBCnstr00037432 | ||||||||
| Construct_product | WBCnstr00037432 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (309) | |||||||||
| Interaction (190) | |||||||||
| Map_info | Map | II | Position | -2.97828 | Error | 0.001354 | |||
| Positive | Positive_clone | F11G11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00000748 | ||||||||
| WBPaper00002222 | |||||||||
| WBPaper00002223 | |||||||||
| WBPaper00006387 | |||||||||
| WBPaper00014165 | |||||||||
| WBPaper00014292 | |||||||||
| WBPaper00020865 | |||||||||
| WBPaper00022194 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059378 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
