WormBase Tree Display for Gene: WBGene00000292
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| WBGene00000292 | SMap | S_parent | Sequence | D2024 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cap-1 | Person_evidence | WBPerson1562 | |||||
| Sequence_name | D2024.6 | ||||||||
| Molecular_name | D2024.6 | ||||||||
| D2024.6.1 | |||||||||
| CE04295 | |||||||||
| Other_name | CAPZ/A | ||||||||
| CELE_D2024.6 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | cap-1 | ||||||||
| DB_info | Database | AceView | gene | 4H994 | |||||
| WormQTL | gene | WBGene00000292 | |||||||
| WormFlux | gene | WBGene00000292 | |||||||
| NDB | locus_tag | CELE_D2024.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000292|UniProtKB=P34685 | |||||||
| family | PTHR10653 | ||||||||
| NCBI | gene | 177497 | |||||||
| RefSeq | protein | NM_068744.6 | |||||||
| SwissProt | UniProtAcc | P34685 | |||||||
| TREEFAM | TREEFAM_ID | TF314822 | |||||||
| UniProt_GCRP | UniProtAcc | P34685 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cap | ||||||||
| Allele (20) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes homolog of actin capping protein, alpha subunit.Functional in yeast. [Waddle et al. 1993] | ||||||||
| Strain | WBStrain00028916 | ||||||||
| WBStrain00055410 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP4216 | ||||||||
| Ortholog (45) | |||||||||
| Structured_description | Concise_description | cap-1 encodes an F-actin capping protein alpha subunit that affects fertility; likely expressed in touch receptor neurons. | Paper_evidence | WBPaper00001839 | |||||
| WBPaper00004651 | |||||||||
| WBPaper00005356 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable actin filament binding activity. Predicted to be involved in actin cytoskeleton organization and barbed-end actin filament capping. Part of dynactin complex. Human ortholog(s) of this gene implicated in male infertility. Is an ortholog of human CAPZA1 (capping actin protein of muscle Z-line subunit alpha 1) and CAPZA2 (capping actin protein of muscle Z-line subunit alpha 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:12336 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24205) | ||||
| Molecular_info | Corresponding_CDS | D2024.6 | |||||||
| Corresponding_transcript | D2024.6.1 | ||||||||
| Other_sequence (48) | |||||||||
| Associated_feature | WBsf651895 | ||||||||
| WBsf668004 | |||||||||
| WBsf230233 | |||||||||
| WBsf230234 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00088764 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00008578 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090793 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007972 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043464 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00088657 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091225 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085703 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091224 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001944 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1048 | ||||||||
| Expr5625 | |||||||||
| Expr16434 | |||||||||
| Expr1010907 | |||||||||
| Expr1030189 | |||||||||
| Expr1147458 | |||||||||
| Expr2009715 | |||||||||
| Expr2027954 | |||||||||
| Drives_construct | WBCnstr00002987 | ||||||||
| WBCnstr00009612 | |||||||||
| WBCnstr00037600 | |||||||||
| Construct_product | WBCnstr00037600 | ||||||||
| Antibody | WBAntibody00001781 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (119) | |||||||||
| Map_info | Map | IV | Position | 3.30656 | Error | 0.001843 | |||
| Positive | Positive_clone (2) | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001839 | ||||||||
| WBPaper00002000 | |||||||||
| WBPaper00005356 | |||||||||
| WBPaper00014754 | |||||||||
| WBPaper00014852 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00021014 | |||||||||
| WBPaper00022120 | |||||||||
| WBPaper00026225 | |||||||||
| WBPaper00037699 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047309 | |||||||||
| WBPaper00052206 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063091 | |||||||||
| WBPaper00065093 | |||||||||
| WBPaper00065275 | |||||||||
| WBPaper00065624 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
