WormBase Tree Display for Gene: WBGene00000012
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| WBGene00000012 | SMap | S_parent | Sequence | C50F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | abf-1 | |||||||
| Sequence_name | C50F2.9 | ||||||||
| Molecular_name | C50F2.9 | ||||||||
| C50F2.9.1 | |||||||||
| CE27879 | |||||||||
| Other_name | CELE_C50F2.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | abf-1 | ||||||||
| DB_info | Database | AceView | gene | 1E454 | |||||
| WormQTL | gene | WBGene00000012 | |||||||
| WormFlux | gene | WBGene00000012 | |||||||
| NDB | locus_tag | CELE_C50F2.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000012|UniProtKB=G5EGC4 | |||||||
| family | PTHR37971 | ||||||||
| NCBI | gene | 266827 | |||||||
| RefSeq | protein | NM_058852.7 | |||||||
| SwissProt | UniProtAcc | G5EGC4 | |||||||
| TREEFAM | TREEFAM_ID | TF322860 | |||||||
| UniProt_GCRP | UniProtAcc | G5EGC4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abf | ||||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00019934 | ||||||||
| 00019935 | |||||||||
| 00106541 | |||||||||
| Contained_in_operon | CEOP1951 | ||||||||
| Ortholog (12) | |||||||||
| Paralog | WBGene00000013 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The abf-1 gene encodes a homolog of the antibacterial factor ASABF from Ascaris suum; it is closely related to abf-2. | Paper_evidence | WBPaper00005130 | |||||
| WBPaper00013575 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in defense response to other organism. Predicted to be located in extracellular region. Expressed in body wall musculature; intestine; neurons; and pharynx. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C50F2.9 | |||||||
| Corresponding_transcript | C50F2.9.1 | ||||||||
| Other_sequence | AS08547 | ||||||||
| AS08543 | |||||||||
| Associated_feature | WBsf219200 | ||||||||
| Experimental_info (8) | |||||||||
| Map_info | Map | I | Position | -1.93912 | Error | 0.003252 | |||
| Positive | Positive_clone | C50F2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003925 | ||||||||
| WBPaper00005130 | |||||||||
| WBPaper00011880 | |||||||||
| WBPaper00011881 | |||||||||
| WBPaper00022426 | |||||||||
| WBPaper00023115 | |||||||||
| WBPaper00023296 | |||||||||
| WBPaper00023386 | |||||||||
| WBPaper00024209 | |||||||||
| WBPaper00025180 | |||||||||
| WBPaper00029438 | |||||||||
| WBPaper00032196 | |||||||||
| WBPaper00032930 | |||||||||
| WBPaper00040853 | |||||||||
| WBPaper00044217 | |||||||||
| WBPaper00058701 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
