WormBase Tree Display for Gene: WBGene00019220
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WBGene00019220 | SMap | S_parent | Sequence | H20J04 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pfd | ||||||
Allele (26) | |||||||
Strain | WBStrain00055411 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00095519 | ||||||
00095520 | |||||||
00095521 | |||||||
00095522 | |||||||
00095523 | |||||||
00095524 | |||||||
00124114 | |||||||
00124115 | |||||||
00124116 | |||||||
Contained_in_operon | CEOP2124 | ||||||
Ortholog (31) | |||||||
Structured_description | Concise_description | pfd-2 encodes a putative prefoldin subunit 2, orthologous to human PFDN2, that is required for normal microtubule growth; pfd-2(RNAi) animals have sterile progeny, and pfd-2(RNAi) embryos show a reduced microtubule growth rate; in mass RNAi assays, PFD-2 is required for normal pronuclear migration, embryonic and larval viability, body shape, and locomotion. | Paper_evidence | WBPaper00004651 | |||
WBPaper00005654 | |||||||
WBPaper00006060 | |||||||
WBPaper00006395 | |||||||
WBPaper00024497 | |||||||
WBPaper00025054 | |||||||
WBPaper00031309 | |||||||
WBPaper00031362 | |||||||
WBPaper00031363 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 14 Jan 2008 00:00:00 | ||||||
Automated_description | Predicted to enable protein folding chaperone. Predicted to be involved in protein folding. Located in endoplasmic reticulum; sarcomere; and striated muscle dense body. Is an ortholog of human PFDN2 (prefoldin subunit 2). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | H20J04.5 | |||||
Corresponding_transcript | H20J04.5.1 | ||||||
Other_sequence (26) | |||||||
Associated_feature | WBsf987575 | ||||||
WBsf987576 | |||||||
WBsf987577 | |||||||
WBsf1012073 | |||||||
WBsf1012074 | |||||||
WBsf221111 | |||||||
WBsf221112 | |||||||
Experimental_info | RNAi_result | WBRNAi00025811 | Inferred_automatically | RNAi_primary | |||
WBRNAi00074492 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00072556 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00109696 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00008927 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00049446 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00109649 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00000676 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00109790 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00074490 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00109743 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00033733 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00074494 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00072555 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00074495 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00072554 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00074493 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00063432 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00074489 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00074491 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00074496 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr9429 | ||||||
Expr1018343 | |||||||
Expr1038301 | |||||||
Expr1153172 | |||||||
Expr2014842 | |||||||
Expr2033077 | |||||||
Construct_product | WBCnstr00013994 | ||||||
WBCnstr00016241 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (102) | |||||||
SAGE_tag | SAGE:ttttcatacgttttttc | Strand | Sense | ||||
Unambiguously_mapped | |||||||
SAGE:ttttcatacg | Strand | Sense | |||||
Unambiguously_mapped | |||||||
SAGE:aaaaagcagt | Strand | Antisense | |||||
SAGE:aaaaagcagtaggaaat | Strand | Antisense | |||||
Interaction (90) | |||||||
Map_info | Map | II | Position | -4.8505 | Error | 0.009757 | |
Positive | Positive_clone | H20J04 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5292 | |||||
4473 | |||||||
5349 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00031309 | ||||||
WBPaper00031320 | |||||||
WBPaper00038444 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |