WormBase Tree Display for Gene: WBGene00006386

WBGene00006386 SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 1
    Name: CGC_name: taf-5
      Sequence_name: F30F8.8
      Molecular_name: F30F8.8
        F30F8.8.1
        CE39361
        F30F8.8.2
      Other_name: CELE_F30F8.8 Accession_evidence: NDB BX284601
      Public_name: taf-5
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: taf
    Allele (60)
    Strain: WBStrain00002973
    RNASeq_FPKM (74)
    GO_annotation: 00017525
      00017526
      00017527
      00017528
      00017529
      00017530
      00017531
      00017532
      00017533
      00017534
    Contained_in_operon: CEOP1428
    Ortholog (37)
    Structured_description: Automated_description: Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Involved in embryo development and transcription by RNA polymerase II. Located in nucleus. Is an ortholog of human TAF5 (TATA-box binding protein associated factor 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F30F8.8
    Corresponding_CDS_history: F30F8.8:wp151
    Corresponding_transcript: F30F8.8.1
      F30F8.8.2
    Other_sequence (25)
    Associated_feature: WBsf643490
      WBsf643491
      WBsf656571
      WBsf656572
      WBsf656573
      WBsf984293
      WBsf1010152
      WBsf218076
    Transcription_factor: WBTranscriptionFactor000380
  Experimental_info: RNAi_result: WBRNAi00066470 Inferred_automatically: RNAi_primary
      WBRNAi00066474 Inferred_automatically: RNAi_primary
      WBRNAi00113014 Inferred_automatically: RNAi_primary
      WBRNAi00001779 Inferred_automatically: RNAi_primary
      WBRNAi00066475 Inferred_automatically: RNAi_primary
      WBRNAi00008050 Inferred_automatically: RNAi_primary
      WBRNAi00066476 Inferred_automatically: RNAi_primary
      WBRNAi00073065 Inferred_automatically: RNAi_primary
      WBRNAi00066473 Inferred_automatically: RNAi_primary
      WBRNAi00025334 Inferred_automatically: RNAi_primary
      WBRNAi00000039 Inferred_automatically: RNAi_primary
      WBRNAi00066468 Inferred_automatically: RNAi_primary
      WBRNAi00117655 Inferred_automatically: RNAi_primary
      WBRNAi00025333 Inferred_automatically: RNAi_primary
      WBRNAi00003543 Inferred_automatically: RNAi_primary
      WBRNAi00066467 Inferred_automatically: RNAi_primary
      WBRNAi00071023 Inferred_automatically: RNAi_primary
      WBRNAi00060914 Inferred_automatically: RNAi_primary
      WBRNAi00076362 Inferred_automatically: RNAi_primary
      WBRNAi00066477 Inferred_automatically: RNAi_primary
      WBRNAi00081373 Inferred_automatically: RNAi_primary
      WBRNAi00060916 Inferred_automatically: RNAi_primary
      WBRNAi00022953 Inferred_automatically: RNAi_primary
      WBRNAi00066469 Inferred_automatically: RNAi_primary
      WBRNAi00073064 Inferred_automatically: RNAi_primary
      WBRNAi00045970 Inferred_automatically: RNAi_primary
      WBRNAi00095598 Inferred_automatically: RNAi_primary
      WBRNAi00066466 Inferred_automatically: RNAi_primary
      WBRNAi00060915 Inferred_automatically: RNAi_primary
      WBRNAi00071024 Inferred_automatically: RNAi_primary
      WBRNAi00117653 Inferred_automatically: RNAi_primary
      WBRNAi00113244 Inferred_automatically: RNAi_primary
      WBRNAi00066478 Inferred_automatically: RNAi_primary
      WBRNAi00117654 Inferred_automatically: RNAi_primary
      WBRNAi00066465 Inferred_automatically: RNAi_primary
      WBRNAi00066471 Inferred_automatically: RNAi_primary
      WBRNAi00066472 Inferred_automatically: RNAi_primary
      WBRNAi00045972 Inferred_automatically: RNAi_primary
      WBRNAi00060913 Inferred_automatically: RNAi_primary
      WBRNAi00031602 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr3569
      Expr5919
      Expr1012108
      Expr1032583
      Expr1149870
      Expr2017215
      Expr2035351
    Drives_construct: WBCnstr00003478
      WBCnstr00034379
    Construct_product: WBCnstr00011493
      WBCnstr00034379
    Antibody: WBAntibody00000605
    Microarray_results (22)
    Expression_cluster (93)
    Interaction (194)
  Map_info: Map: I Position: 2.37598 Error: 0.00155
    Positive: Positive_clone: F30F8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004890
    WBPaper00005725
    WBPaper00006475
    WBPaper00018966
    WBPaper00027309
    WBPaper00029038
    WBPaper00038491
    WBPaper00048493
    WBPaper00055090
    WBPaper00065308
  Remark: Sequence connection from [source: A Walker]
    This gene was previously called taf-4 [krb 020614]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene