WormBase Tree Display for Gene: WBGene00003470
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WBGene00003470 | SMap | S_parent | Sequence | ZK546 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | msp-152 | Person_evidence | WBPerson680 | |||||
Sequence_name | ZK546.6 | ||||||||
Molecular_name | ZK546.6 | ||||||||
ZK546.6.1 | |||||||||
CE02920 | |||||||||
Other_name | CELE_ZK546.6 | Accession_evidence | NDB | BX284602 | |||||
Public_name | msp-152 | ||||||||
DB_info | Database | AceView | gene | 2F225 | |||||
WormQTL | gene | WBGene00003470 | |||||||
WormFlux | gene | WBGene00003470 | |||||||
NDB | locus_tag | CELE_ZK546.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003470|UniProtKB=Q23519 | |||||||
family | PTHR22920 | ||||||||
NCBI | gene | 191712 | |||||||
RefSeq | protein | NM_062500.10 | |||||||
SwissProt | UniProtAcc | Q23519 | |||||||
UniProt_GCRP | UniProtAcc | Q23519 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | msp | ||||||||
Allele | WBVar01499702 | ||||||||
WBVar01498435 | |||||||||
WBVar00728973 | |||||||||
WBVar00728974 | |||||||||
WBVar00728975 | |||||||||
WBVar00365113 | |||||||||
WBVar01783278 | |||||||||
WBVar01783279 | |||||||||
Legacy_information | Cluster of five genes including msp-152 (transcribed). | ||||||||
[C.elegansII] NMK. Encodes MSP (16kD). Defines cluster of five genes including msp-152 (transcribed). [Ward et al. (1988); BA] | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00078717 | ||||||||
00078718 | |||||||||
00078719 | |||||||||
00078720 | |||||||||
00078721 | |||||||||
Ortholog (31) | |||||||||
Paralog (50) | |||||||||
Structured_description | Concise_description | msp-152 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
WBPaper00002143 | |||||||||
WBPaper00003113 | |||||||||
WBPaper00004591 | |||||||||
WBPaper00005670 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 17 May 2005 00:00:00 | ||||||||
Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00022056 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00051312 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023549 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00024082 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090815 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027077 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00115460 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070149 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103473 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023284 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017457 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027562 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027078 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00115527 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023795 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017455 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017460 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051319 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059507 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038334 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3417 | ||||||||
Expr1162926 | |||||||||
Expr2013771 | |||||||||
Expr2032007 | |||||||||
Drives_construct | WBCnstr00036097 | ||||||||
Construct_product | WBCnstr00036097 | ||||||||
Antibody | WBAntibody00000037 | ||||||||
WBAntibody00000038 | |||||||||
WBAntibody00000854 | |||||||||
WBAntibody00000855 | |||||||||
WBAntibody00000856 | |||||||||
WBAntibody00000857 | |||||||||
WBAntibody00000858 | |||||||||
Microarray_results | SMD_ZK546.6 | ||||||||
172798_x_at | |||||||||
172900_x_at | |||||||||
A_12_P106775 | |||||||||
A_12_P134310 | |||||||||
Aff_ZK546.6 | |||||||||
GPL3518_CE02920 | |||||||||
GPL8673_ZK546_6P00192 | |||||||||
Expression_cluster (241) | |||||||||
Interaction (218) | |||||||||
Map_info | Map | II | Position | -2.90252 | Error | 0.003087 | |||
Positive | Positive_clone | BA#53 | |||||||
ZK546 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001023 | ||||||||
WBPaper00001024 | |||||||||
WBPaper00024312 | |||||||||
WBPaper00025088 | |||||||||
WBPaper00029226 | |||||||||
WBPaper00031218 | |||||||||
WBPaper00040308 | |||||||||
WBPaper00044625 | |||||||||
WBPaper00057218 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |