WormBase Tree Display for Gene: WBGene00003079
expand all nodes | collapse all nodes | view schema
| WBGene00003079 | Evidence | Person_evidence | WBPerson1846 | ||||
|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F28F8 | ||||
| Identity (6) | |||||||
| Gene_info | Biotype | SO:0001217 | |||||
| Gene_class | lsm | ||||||
| Allele (12) | |||||||
| Strain | WBStrain00037485 | ||||||
| RNASeq_FPKM (74) | |||||||
| GO_annotation (15) | |||||||
| Ortholog (35) | |||||||
| Structured_description | Automated_description | Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Lsm1-7-Pat1 complex; U4/U6 x U5 tri-snRNP complex; and U6 snRNP. Is an ortholog of human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated). | Paper_evidence | WBPaper00065943 | |||
| Curator_confirmed | WBPerson324 | ||||||
| WBPerson37462 | |||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
| Molecular_info | Corresponding_CDS | F28F8.3 | |||||
| Corresponding_transcript | F28F8.3.1 | ||||||
| Other_sequence (60) | |||||||
| Associated_feature | WBsf647601 | ||||||
| Experimental_info | RNAi_result | WBRNAi00014061 | Inferred_automatically | RNAi_primary | |||
| WBRNAi00117295 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045849 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00083680 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00083575 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00061511 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00083770 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031534 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00117285 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00083522 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00083489 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00117306 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00085620 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1010827 | ||||||
| Expr1031454 | |||||||
| Expr1149754 | |||||||
| Expr2013292 | |||||||
| Expr2031523 | |||||||
| Microarray_results (23) | |||||||
| Expression_cluster (121) | |||||||
| SAGE_tag | SAGE:ttcacgtagt | Strand | Antisense | ||||
| SAGE:gttctggaggacgtcgt | Strand | Sense | |||||
| Unambiguously_mapped | |||||||
| SAGE:gttctggagg | Strand | Sense | |||||
| Unambiguously_mapped | |||||||
| SAGE:ttcacgtagtcatcgaa | Strand | Antisense | |||||
| Interaction (235) | |||||||
| Map_info | Map | V | Position | 8.36658 | Error | 0.003911 | |
| Positive | Positive_clone | F28F8 | Inferred_automatically | From CDS info | |||
| From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||
| Reference | WBPaper00028564 | ||||||
| WBPaper00038491 | |||||||
| WBPaper00046572 | |||||||
| WBPaper00055090 | |||||||
| WBPaper00059378 | |||||||
| WBPaper00059527 | |||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
| Method | Gene |
