WormBase Tree Display for Gene: WBGene00003785
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WBGene00003785 | SMap | S_parent | Sequence | Y53C12B | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | nos-3 | Person_evidence | WBPerson575 | |||||
Sequence_name | Y53C12B.3 | ||||||||
Molecular_name (15) | |||||||||
Other_name | syt-1 | ||||||||
pqn-86 | |||||||||
Nanos | Paper_evidence | WBPaper00053101 | |||||||
CELE_Y53C12B.3 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | nos-3 | ||||||||
DB_info | Database | AceView | gene | 2K39 | |||||
WormQTL | gene | WBGene00003785 | |||||||
WormFlux | gene | WBGene00003785 | |||||||
NDB | locus_tag | CELE_Y53C12B.3 | |||||||
NCBI | gene | 174535 | |||||||
RefSeq | protein | NM_001393164.1 | |||||||
NM_001393165.1 | |||||||||
NM_063700.4 | |||||||||
NM_001395805.1 | |||||||||
NM_063701.5 | |||||||||
TREEFAM | TREEFAM_ID | TF350042 | |||||||
TrEMBL | UniProtAcc | A0A7R9XN27 | |||||||
O62486 | |||||||||
O18218 | |||||||||
A0A7R9XLP7 | |||||||||
A0A7R9XMZ3 | |||||||||
UniProt_GCRP | UniProtAcc | A0A7R9XMZ3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nos | ||||||||
Allele (82) | |||||||||
Strain | WBStrain00022580 | ||||||||
WBStrain00022615 | |||||||||
WBStrain00054810 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00031725 | ||||||||
00031726 | |||||||||
00031727 | |||||||||
00031728 | |||||||||
00031729 | |||||||||
00031730 | |||||||||
00031731 | |||||||||
00037989 | |||||||||
Ortholog (20) | |||||||||
Structured_description | Concise_description | nos-3 encodes a homolog of Drosophila NANOS that physically interacts with FBF-1 (similar, though not orthologous, to Drosophila PUMILIO); NOS-3 is required in development of the hermaphrodite germ-line to promote the switch from sperm to oocyte production, perhaps by forming a complex with FBF-1 that controls fem-3 mRNA. | Paper_evidence | WBPaper00003692 | |||||
WBPaper00005068 | |||||||||
WBPaper00012788 | |||||||||
WBPaper00012830 | |||||||||
WBPaper00012882 | |||||||||
WBPaper00012897 | |||||||||
WBPaper00013003 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable RNA binding activity. Involved in positive regulation of meiotic nuclear division. Located in cytoplasm. Expressed in several structures, including Psub3; Psub4; Z2; Z3; and germ line. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y53C12B.3a | |||||||
Y53C12B.3b | |||||||||
Y53C12B.3c | |||||||||
Y53C12B.3d | |||||||||
Y53C12B.3e | |||||||||
Corresponding_transcript | Y53C12B.3a.1 | ||||||||
Y53C12B.3b.1 | |||||||||
Y53C12B.3c.1 | |||||||||
Y53C12B.3d.1 | |||||||||
Y53C12B.3e.1 | |||||||||
Other_sequence | CR00137 | ||||||||
CRC05300_1 | |||||||||
CR00136 | |||||||||
MC05328 | |||||||||
CR08429 | |||||||||
Associated_feature (11) | |||||||||
Experimental_info | RNAi_result | WBRNAi00085051 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00085135 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086646 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086645 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037406 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062450 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086647 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061213 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020913 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077107 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020912 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085133 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00057257 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1202 | ||||||||
Expr1203 | |||||||||
Expr1011795 | |||||||||
Expr1031771 | |||||||||
Expr1160694 | |||||||||
Expr2014358 | |||||||||
Expr2032599 | |||||||||
Drives_construct | WBCnstr00008698 | ||||||||
WBCnstr00008699 | |||||||||
WBCnstr00008700 | |||||||||
WBCnstr00035868 | |||||||||
Construct_product | WBCnstr00005242 | ||||||||
WBCnstr00008698 | |||||||||
WBCnstr00008699 | |||||||||
WBCnstr00008700 | |||||||||
WBCnstr00035868 | |||||||||
Antibody | WBAntibody00000240 | ||||||||
Microarray_results (42) | |||||||||
Expression_cluster (117) | |||||||||
Interaction (122) | |||||||||
Map_info | Map | II | Position | 1.70862 | Error | 0.00125 | |||
Positive | Positive_clone | Y53C12B | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4543 | |||||||
5522 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003692 | ||||||||
WBPaper00003762 | |||||||||
WBPaper00004256 | |||||||||
WBPaper00004549 | |||||||||
WBPaper00005338 | |||||||||
WBPaper00006073 | |||||||||
WBPaper00006101 | |||||||||
WBPaper00006369 | |||||||||
WBPaper00006404 | |||||||||
WBPaper00006491 | |||||||||
WBPaper00012342 | |||||||||
WBPaper00012436 | |||||||||
WBPaper00012443 | |||||||||
WBPaper00018262 | |||||||||
WBPaper00018394 | |||||||||
WBPaper00018718 | |||||||||
WBPaper00018890 | |||||||||
WBPaper00018891 | |||||||||
WBPaper00023240 | |||||||||
WBPaper00024263 | |||||||||
WBPaper00024787 | |||||||||
WBPaper00025000 | |||||||||
WBPaper00025264 | |||||||||
WBPaper00026545 | |||||||||
WBPaper00026645 | |||||||||
WBPaper00026961 | |||||||||
WBPaper00027224 | |||||||||
WBPaper00027248 | |||||||||
WBPaper00027261 | |||||||||
WBPaper00027268 | |||||||||
WBPaper00027294 | |||||||||
WBPaper00027310 | |||||||||
WBPaper00027374 | |||||||||
WBPaper00027724 | |||||||||
WBPaper00027803 | |||||||||
WBPaper00027842 | |||||||||
WBPaper00028032 | |||||||||
WBPaper00029255 | |||||||||
WBPaper00031905 | |||||||||
WBPaper00032055 | |||||||||
WBPaper00032220 | |||||||||
WBPaper00032496 | |||||||||
WBPaper00033123 | |||||||||
WBPaper00033153 | |||||||||
WBPaper00033205 | |||||||||
WBPaper00034378 | |||||||||
WBPaper00034537 | |||||||||
WBPaper00034865 | |||||||||
WBPaper00036244 | |||||||||
WBPaper00036705 | |||||||||
WBPaper00036884 | |||||||||
WBPaper00036942 | |||||||||
WBPaper00038112 | |||||||||
WBPaper00038281 | |||||||||
WBPaper00038411 | |||||||||
WBPaper00038448 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00040600 | |||||||||
WBPaper00043624 | |||||||||
WBPaper00046425 | |||||||||
WBPaper00048212 | |||||||||
WBPaper00053101 | |||||||||
WBPaper00057161 | |||||||||
WBPaper00061187 | |||||||||
WBPaper00065284 | |||||||||
Picture | WBPicture0000013095 | ||||||||
Remark | Sequence connection from [Kraemer B, Kimble JE, Wickens MP] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |