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WormBase Tree Display for Gene: WBGene00234173

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Name Class

WBGene00234173SMapS_parentSequenceBm_v4_ChrX_scaffold_001
IdentityVersion6
NameCGC_nameBma-snr-7From_analysisInferred_from_orthology
Sequence_nameBm13912
Molecular_nameBm13912
Bm13912.1
BM00740
Other_nameBm-snr-7
TAG13912Curator_confirmedWBPerson4055
Bm1_11805ACurator_confirmedWBPerson4055
Bm1_11805Person_evidenceWBPerson5841
Public_nameBma-snr-7
SpeciesBrugia malayi
HistoryVersion_change110 Dec 2012 14:43:26WBPerson4055EventCreated
205 Jul 2013 11:43:21WBPerson4055Name_changeCGC_nameBma-snr-7
Other_nameBm-snr-7
308 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:25WBPerson1983Name_changeCGC_nameBma-snr-7
528 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameBma-snr-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsnr
RNASeq_FPKMWBls:0000097229.414From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.L3/L4.WBbt:0007833.SRP068692.SRX1539819
1347.16From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
228.377From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
378.747From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
400.237From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
437.799From_analysisRNASeq.brugia.WBls:0000097.control_median
475.361From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
601.293From_analysisRNASeq.brugia.WBls:0000097.control_mean
777.877From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
WBls:0000078123.127From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
126.866From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
167.056From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
179.505From_analysisRNASeq.brugia.WBls:0000078.control_mean
180.686From_analysisRNASeq.brugia.WBls:0000078.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
196.107From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
202.883From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
259.807From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
WBls:0000080333From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
358.941From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
500.959From_analysisRNASeq.brugia.WBls:0000080.control_mean
505.922From_analysisRNASeq.brugia.WBls:0000080.control_median
652.904From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
658.992From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
WBls:0000081 (24)
WBls:0000082124.499From_analysisRNASeq.brugia.WBls:0000082.control_mean
208.646From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
228.173From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
57.1684From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
62.1358From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
66.3697From_analysisRNASeq.brugia.WBls:0000082.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
WBls:0000083 (82)
WBls:0000092210.734From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
215.363From_analysisRNASeq.brugia.WBls:0000092.control_mean
RNASeq.brugia.WBls:0000092.control_median
219.993From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009463.8476From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
65.4492From_analysisRNASeq.brugia.WBls:0000094.control_mean
RNASeq.brugia.WBls:0000094.control_median
67.0508From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:0000101159.057From_analysisRNASeq.brugia.total_over_all_stages.control_median
188.654From_analysisRNASeq.brugia.total_over_all_stages.control_mean
WBls:0000662128.196From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
149.146From_analysisRNASeq.brugia.WBls:0000662.control_mean
RNASeq.brugia.WBls:0000662.control_median
170.097From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066335.2187From_analysisRNASeq.brugia.WBls:0000663.control_mean
RNASeq.brugia.WBls:0000663.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Ortholog (29)
ParalogWBGene00234174Brugia malayiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by 20-hydroxyecdysone and ivermectin based on proteomic and RNA-seq studies. Is predicted to encode a protein with the following domains: Sm-like protein Lsm7/SmG; LSM domain; LSM domain, eukaryotic/archaea-type; and LSM domain superfamily. Is an ortholog of C. elegans snr-7.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSBm13912
Corresponding_transcriptBm13912.1
Other_sequence (99)
Experimental_infoExpression_clusterWBPaper00045439:BM_Cluster_P16
WBPaper00049261:20-hydroxyecdysone_upregulated_protein
WBPaper00049974:ivermectin_100nM_48h_downregulated
ReferenceWBPaper00045439
Remark[190208 pad] The CGC name Bma-snr-7 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Bma-snr-7 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene