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WormBase Tree Display for Gene: WBGene00223074

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Name Class

WBGene00223074SMapS_parentSequenceBm_v4_Chr2_contig_001
IdentityVersion6
NameCGC_nameBma-xpf-1From_analysisInferred_from_orthology
Sequence_nameBm2813
Molecular_nameBm2813a
Bm2813a.1
BM38154
Bm2813b
BM48162
Bm2813b.1
Other_nameTAG2813Curator_confirmedWBPerson4055
Bm1_46945ACurator_confirmedWBPerson4055
Bm1_46950ACurator_confirmedWBPerson4055
Bm1_46945Person_evidenceWBPerson5841
Public_nameBma-xpf-1
SpeciesBrugia malayi
HistoryVersion_change110 Dec 2012 14:43:24WBPerson4055EventCreated
224 Mar 2014 11:31:06WBPerson4055Name_changeCGC_nameBma-xpf-1
308 Feb 2019 15:42:30WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:24WBPerson1983Name_changeCGC_nameBma-xpf-1
528 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameBma-xpf-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxpf
RNASeq_FPKMWBls:00000978.76056From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.L3/L4.WBbt:0007833.SRP068692.SRX1539819
10.497From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
12.4899From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
15.0559From_analysisRNASeq.brugia.WBls:0000097.control_median
15.1278From_analysisRNASeq.brugia.WBls:0000097.control_mean
17.6218From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
0From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
22.3743From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
27.7836From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
WBls:000007812.7356From_analysisRNASeq.brugia.WBls:0000078.control_mean
19.63From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
19.7133From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
20.3136From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
4.4571From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
6.39657From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
8.97995From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
9.65853From_analysisRNASeq.brugia.WBls:0000078.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
WBls:000008011.1893From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
11.3097From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
12.9094From_analysisRNASeq.brugia.WBls:0000080.control_median
13.1458From_analysisRNASeq.brugia.WBls:0000080.control_mean
14.5092From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
15.5748From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
WBls:0000081 (24)
WBls:000008210.0448From_analysisRNASeq.brugia.WBls:0000082.control_mean
10.9147From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
11.3738From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
8.46376From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
9.70399From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
9.76752From_analysisRNASeq.brugia.WBls:0000082.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
WBls:0000083 (82)
WBls:000009216.4903From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
17.0194From_analysisRNASeq.brugia.WBls:0000092.control_mean
RNASeq.brugia.WBls:0000092.control_median
17.5485From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009420.1673From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
20.1707From_analysisRNASeq.brugia.WBls:0000094.control_mean
RNASeq.brugia.WBls:0000094.control_median
20.1742From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:000010111.3097From_analysisRNASeq.brugia.total_over_all_stages.control_median
11.9908From_analysisRNASeq.brugia.total_over_all_stages.control_mean
WBls:000066224.1392From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
24.6465From_analysisRNASeq.brugia.WBls:0000662.control_mean
RNASeq.brugia.WBls:0000662.control_median
25.1539From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066324.1299From_analysisRNASeq.brugia.WBls:0000663.control_mean
RNASeq.brugia.WBls:0000663.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
GO_annotation00239817
00239818
Contained_in_operonBMOP1956
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and nuclease activity. Is an ortholog of C. elegans xpf-1. In C. elegans, xpf-1 is involved in DNA damage response; meiotic nuclear division; and regulation of multicellular organismal development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSBm2813a
Bm2813b
Corresponding_transcriptBm2813a.1
Bm2813b.1
Other_sequence (26)
Experimental_infoExpression_clusterWBPaper00051007:downregulated_F120_vs_F30
WBPaper00061765:L4_vs_Micro_Upregulated
ReferenceWBPaper00045439
Remark[190208 pad] The CGC name Bma-xpf-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Bma-xpf-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene