WormBase Tree Display for Gene: WBGene00109263
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WBGene00109263 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Identity | Version | 10 | ||||
Name | CGC_name | Ppa-unc-58.1 | From_analysis | Inferred_from_orthology | ||
Sequence_name | PPA19709 | |||||
Molecular_name | PPA19709 | |||||
PPA19709.1 | ||||||
PP71580 | ||||||
Other_name | GENEPREDICTION_SNAP300000076544 | |||||
UMM-S285-5.12 | Person_evidence | WBPerson606 | ||||
Public_name | Ppa-unc-58.1 | |||||
Species | Pristionchus pacificus | |||||
History | Version_change (10) | |||||
Acquires_merge (2) | ||||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | unc | |||||
RNASeq_FPKM | WBls:0000032 | 1.81709 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
RNASeq.pristionchus.WBls:0000032.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
WBls:0000101 | 1.81709 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||
2.75168 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||
6.43794 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||
RNASeq.pristionchus.WBls:0000101.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
GO_annotation | 00182149 | |||||
00182150 | ||||||
00182151 | ||||||
Ortholog (29) | ||||||
Paralog (48) | ||||||
Structured_description | Automated_description | Predicted to enable potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-58. In C. elegans, unc-58 is involved in several processes, including muscle contraction; parturition; and regulation of muscle contraction. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | PPA19709 | ||||
Corresponding_transcript | PPA19709.1 | |||||
Other_sequence | Oden_isotig20775 | |||||
MA01078 | ||||||
EY465143.1 | ||||||
Dviv_isotig18025 | ||||||
SS02144 | ||||||
FC540247.1 | ||||||
FC555493.1 | ||||||
Tcol_isotig14758 | ||||||
Dviv_isotig18026 | ||||||
ACC17041_1 | ||||||
Oden_isotig22416 | ||||||
FC547160.1 | ||||||
Acan_isotig04136 | ||||||
JI220536.1 | ||||||
EY470990.1 | ||||||
JI179415.1 | ||||||
MAC02044_1 | ||||||
SSC00896_1 | ||||||
FC547717.1 | ||||||
ACC38029_1 | ||||||
EY473489.1 | ||||||
EY463648.1 | ||||||
Experimental_info | Microarray_results | GPL14372_Probes_4217 | ||||
GPL14372_Probes_4218 | ||||||
GPL14372_Probes_43552 | ||||||
GPL14372_Probes_43554 | ||||||
Remark | [190208 pad] The CGC name Ppa-unc-58.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
[191001 pad] The CGC name Ppa-unc-58.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
[210528 pad] The CGC name Ppa-unc-58.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |