WormBase Tree Display for Gene: WBGene00020112
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WBGene00020112 | SMap | S_parent | Sequence | R151 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pfd-5 | Person_evidence (2) | ||||||
Sequence_name | R151.9 | ||||||||
Molecular_name | R151.9 | ||||||||
R151.9.1 | |||||||||
CE00827 | |||||||||
Other_name | 3H288 | Accession_evidence | EMBL | AF303258 | |||||
CELE_R151.9 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | pfd-5 | ||||||||
DB_info | Database | AceView | gene | 3I288 | |||||
WormQTL | gene | WBGene00020112 | |||||||
WormFlux | gene | WBGene00020112 | |||||||
NDB | locus_tag | CELE_R151.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00020112|UniProtKB=Q21993 | |||||||
family | PTHR12674 | ||||||||
NCBI | gene | 176013 | |||||||
RefSeq | protein | NM_066181.6 | |||||||
SwissProt | UniProtAcc | Q21993 | |||||||
TREEFAM | TREEFAM_ID | TF106509 | |||||||
UniProt_GCRP | UniProtAcc | Q21993 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 02 Aug 2006 11:39:27 | WBPerson2970 | Name_change | CGC_name | pfd-5 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pfd | ||||||||
Allele (19) | |||||||||
Strain | WBStrain00001158 | ||||||||
WBStrain00036684 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00073616 | ||||||||
00073617 | |||||||||
00073618 | |||||||||
00073619 | |||||||||
00073620 | |||||||||
00124826 | |||||||||
00124827 | |||||||||
00124828 | |||||||||
Contained_in_operon | CEOP3420 | ||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00018071 | Caenorhabditis elegans | From_analysis | Panther | |||||
Structured_description | Concise_description | pfd-5 encodes a putative prefoldin 5 subunit, orthologous to human PFDN5 (OMIM:604899), that is required for normal microtubule growth, embryonic and larval viability, fertility, vulval development, and locomotion; PFD-5 is expressed in most, if not all, tissues; pfd-5(RNAi) animals show sterile progeny, larval arrest or lethality, uncoordination, and abnormal body shapes, and pfd-5(RNAi) embryos show a reduced microtubule growth rate. | Paper_evidence | WBPaper00004403 | |||||
WBPaper00005654 | |||||||||
WBPaper00006395 | |||||||||
WBPaper00024497 | |||||||||
WBPaper00025054 | |||||||||
WBPaper00031309 | |||||||||
WBPaper00031362 | |||||||||
WBPaper00031363 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
Automated_description | Predicted to enable unfolded protein binding activity. Predicted to be involved in RNA polymerase I assembly; RNA polymerase II core complex assembly; and RNA polymerase III assembly. Predicted to be located in cytoplasm. Predicted to be part of prefoldin complex. Expressed in body wall musculature; head muscle; pharyngeal muscle cell; and vulval muscle. Is an ortholog of human PFDN5 (prefoldin subunit 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R151.9 | |||||||
Corresponding_transcript | R151.9.1 | ||||||||
Other_sequence | ES739020.1 | ||||||||
HCC13129_1 | |||||||||
Tcol_isotig02541 | |||||||||
CJC01275_1 | |||||||||
Oden_isotig16042 | |||||||||
HBC01650_1 | |||||||||
CBC03674_1 | |||||||||
NBC00648_1 | |||||||||
ASC00651_1 | |||||||||
WBC02342_1 | |||||||||
DIC00969_1 | |||||||||
Tcol_isotig02542 | |||||||||
ES743285.1 | |||||||||
CK855028.1 | |||||||||
AS03765 | |||||||||
JI177429.1 | |||||||||
Hbac_isotig03615 | |||||||||
Tcol_isotig02543 | |||||||||
NB08221 | |||||||||
DI00233 | |||||||||
EX915745.1 | |||||||||
ES411690.1 | |||||||||
Tcol_isotig02540 | |||||||||
HC09636 | |||||||||
Associated_feature | WBsf651181 | ||||||||
WBsf666471 | |||||||||
WBsf226932 | |||||||||
Experimental_info | RNAi_result | WBRNAi00067299 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00002818 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026126 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051983 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00067873 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00002660 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009079 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034943 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7840 | ||||||||
Expr1025899 | |||||||||
Expr1038748 | |||||||||
Expr1155625 | |||||||||
Expr2014845 | |||||||||
Expr2033080 | |||||||||
Drives_construct | WBCnstr00002050 | ||||||||
WBCnstr00025366 | |||||||||
Construct_product | WBCnstr00025366 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (110) | |||||||||
Interaction (91) | |||||||||
Map_info | Map | III | Position | -0.772 | |||||
Positive | Positive_clone | R151 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031309 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00049828 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00057218 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
[200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-0.772512) | |||||||||
[200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-0.769642) | |||||||||
Method | Gene |