WormBase Tree Display for Gene: WBGene00018866
expand all nodes | collapse all nodes | view schema
WBGene00018866 | SMap | S_parent | Sequence | F55A12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | nath-10 | Person_evidence | WBPerson6405 | |||||
WBPerson172 | |||||||||
Sequence_name | F55A12.8 | ||||||||
Molecular_name | F55A12.8 | ||||||||
F55A12.8.1 | |||||||||
CE11131 | |||||||||
Other_name | let-599 | Person_evidence | WBPerson533 | ||||||
CELE_F55A12.8 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | nath-10 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 15 Feb 2011 15:52:17 | WBPerson2970 | Name_change | CGC_name | nath-10 | ||||
3 | 05 Mar 2015 09:44:45 | WBPerson2970 | Event | Acquires_merge | WBGene00002777 | ||||
Name_change | Other_name | let-599 | |||||||
Acquires_merge | WBGene00002777 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nath | ||||||||
Allele (32) | |||||||||
Legacy_information | [McDowall JS] lethal | ||||||||
[McDowall JS] Sterile adult | |||||||||
[C.elegansII] h290 : sterile adult. NA1. [KR] | |||||||||
Strain (5) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (22) | |||||||||
Ortholog (40) | |||||||||
Structured_description | Automated_description | Predicted to enable rRNA cytidine N-acetyltransferase activity and tRNA binding activity. Predicted to be involved in rRNA acetylation involved in maturation of SSU-rRNA. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Expressed in head; seam cell; and tail. Is an ortholog of human NAT10 (N-acetyltransferase 10). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F55A12.8 | |||||||
Corresponding_transcript | F55A12.8.1 | ||||||||
Other_sequence | EX560672.1 | ||||||||
OOC02605_1 | |||||||||
HGC04722_1 | |||||||||
Acan_isotig09099 | |||||||||
HG01294 | |||||||||
EV850704.1 | |||||||||
Dviv_isotig19844 | |||||||||
FC545005.1 | |||||||||
Hbac_isotig04601 | |||||||||
PP01135 | |||||||||
EY462546.1 | |||||||||
JI464250.1 | |||||||||
Dviv_isotig19845 | |||||||||
JI478307.1 | |||||||||
Oden_isotig22768 | |||||||||
ACC05734_1 | |||||||||
TSC14053_1 | |||||||||
PPC01074_1 | |||||||||
HGC05536_1 | |||||||||
JO467886.1 | |||||||||
HG11902 | |||||||||
JO473352.1 | |||||||||
DVC03149_1 | |||||||||
Oden_isotig19559 | |||||||||
ACC29427_1 | |||||||||
JI474995.1 | |||||||||
EY468426.1 | |||||||||
EY471673.1 | |||||||||
Dviv_isotig32130 | |||||||||
CJC09564_1 | |||||||||
PPC15581_1 | |||||||||
ES564910.1 | |||||||||
GO251286.1 | |||||||||
FD514133.1 | |||||||||
JI164919.1 | |||||||||
EX566613.1 | |||||||||
Acan_isotig18077 | |||||||||
CSC01757_1 | |||||||||
ACC17773_1 | |||||||||
BMC09235_1 | |||||||||
Associated_feature | WBsf219413 | ||||||||
Experimental_info | RNAi_result (23) | ||||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00002051 | ||||||||
WBCnstr00004201 | |||||||||
WBCnstr00026231 | |||||||||
Construct_product | WBCnstr00026231 | ||||||||
Regulate_expr_cluster | WBPaper00061466:nath-10(icb99)_downregulated | ||||||||
WBPaper00061466:nath-10(icb99)_upregulated | |||||||||
WBPaper00061466:nath-10(icb102)_downregulated | |||||||||
WBPaper00061466:nath-10(icb102)_upregulated | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (95) | |||||||||
Interaction (376) | |||||||||
Map_info | Map | I | Position | -0.07701 | Error | 0.008125 | |||
Positive | Positive_clone | F55A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Negative | Negative_clone | C12H4 | |||||||
C24H1 | |||||||||
C28A7 | |||||||||
C30A6 | |||||||||
F40D12 | |||||||||
M01A10 | |||||||||
M01E11 | |||||||||
Mapping_data | 2_point | 6034 | |||||||
6033 | |||||||||
Pos_neg_data | 6035 | ||||||||
6036 | |||||||||
6037 | |||||||||
Pseudo_map_position | |||||||||
Reference (17) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
[McDowall JS] Extrachromosomal arrays containing three cosmids generated, then manipulated genetically. | |||||||||
Method | Gene |