WormBase Tree Display for Gene: WBGene00017830
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| WBGene00017830 | SMap | S_parent | Sequence | F26F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rpb-8 | Person_evidence | WBPerson1787 | |||||
| Sequence_name | F26F4.11 | ||||||||
| Molecular_name | F26F4.11 | ||||||||
| F26F4.11.1 | |||||||||
| CE04448 | |||||||||
| Other_name | CELE_F26F4.11 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rpb-8 | ||||||||
| DB_info | Database | AceView | gene | 3G6 | |||||
| WormQTL | gene | WBGene00017830 | |||||||
| WormFlux | gene | WBGene00017830 | |||||||
| NDB | locus_tag | CELE_F26F4.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017830|UniProtKB=Q19826 | |||||||
| family | PTHR10917 | ||||||||
| NCBI | gene | 175660 | |||||||
| RefSeq | protein | NM_065635.5 | |||||||
| SwissProt | UniProtAcc | Q19826 | |||||||
| TREEFAM | TREEFAM_ID | TF103043 | |||||||
| UniProt_GCRP | UniProtAcc | Q19826 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Oct 2007 14:17:58 | WBPerson2970 | Name_change | CGC_name | rpb-8 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpb | ||||||||
| Allele (6) | |||||||||
| Strain | WBStrain00051264 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP3895 | ||||||||
| Ortholog (33) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase I; transcription by RNA polymerase II; and transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Is an ortholog of human POLR2H (RNA polymerase II, I and III subunit H). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F26F4.11 | |||||||
| Corresponding_transcript | F26F4.11.1 | ||||||||
| Other_sequence | NBC00642_1 | ||||||||
| MJ01380 | |||||||||
| HG00619 | |||||||||
| Tcir_isotig22398 | |||||||||
| MI01992 | |||||||||
| Acan_isotig07409 | |||||||||
| HGC00905_1 | |||||||||
| Dviv_isotig18866 | |||||||||
| Tcol_isotig02394 | |||||||||
| FM207723.1 | |||||||||
| HG06572 | |||||||||
| CB037014.1 | |||||||||
| CV199466.1 | |||||||||
| NB08212 | |||||||||
| MIC00750_1 | |||||||||
| HCC04165_1 | |||||||||
| FG973504.1 | |||||||||
| Tcir_isotig02279 | |||||||||
| CB036221.1 | |||||||||
| Tcol_isotig02391 | |||||||||
| AYC04202_1 | |||||||||
| RSC00501_1 | |||||||||
| CBC16232_1 | |||||||||
| HBC05837_1 | |||||||||
| Oden_isotig23663 | |||||||||
| HG05598 | |||||||||
| CRC00873_1 | |||||||||
| MH03791 | |||||||||
| CR01400 | |||||||||
| Tcol_isotig02395 | |||||||||
| HC06919 | |||||||||
| MC00789 | |||||||||
| MJC00409_1 | |||||||||
| Tcol_isotig02390 | |||||||||
| Tcol_isotig02393 | |||||||||
| TDC01691_1 | |||||||||
| CBC05126_1 | |||||||||
| Hbac_isotig03971 | |||||||||
| RS06826 | |||||||||
| MP01496 | |||||||||
| MCC05651_1 | |||||||||
| CRC03668_1 | |||||||||
| CRC00798_1 | |||||||||
| MPC00530_1 | |||||||||
| Tcir_isotig02278 | |||||||||
| Dviv_isotig18867 | |||||||||
| JI212560.1 | |||||||||
| PVC00465_1 | |||||||||
| PPC08954_1 | |||||||||
| Tcol_isotig02392 | |||||||||
| CJC03056_1 | |||||||||
| HG06830 | |||||||||
| MI00469 | |||||||||
| AE02164 | |||||||||
| Tcir_isotig06091 | |||||||||
| Associated_feature | WBsf651017 | ||||||||
| WBsf226606 | |||||||||
| Experimental_info | RNAi_result (30) | ||||||||
| Expr_pattern | Expr1014365 | ||||||||
| Expr1037663 | |||||||||
| Expr1149583 | |||||||||
| Expr2015428 | |||||||||
| Expr2033663 | |||||||||
| Drives_construct | WBCnstr00026981 | ||||||||
| Construct_product | WBCnstr00026981 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction (362) | |||||||||
| Map_info | Map | III | Position | -2.37212 | Error | 0.002052 | |||
| Positive | Positive_clone | F26F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029038 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064934 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
