WormBase Tree Display for Gene: WBGene00017304
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| WBGene00017304 | SMap | S_parent | Sequence | F09F7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nmad-1 | |||||||
| Sequence_name | F09F7.7 | ||||||||
| Molecular_name | F09F7.7a | ||||||||
| F09F7.7a.1 | |||||||||
| CE30655 | |||||||||
| F09F7.7b | |||||||||
| CE30656 | |||||||||
| F09F7.7b.1 | |||||||||
| Other_name | CELE_F09F7.7 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | nmad-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 15 Mar 2018 12:23:35 | WBPerson1983 | Name_change | CGC_name | nmad-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nmad | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00037403 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Enables oxidative DNA demethylase activity. Involved in several processes, including meiotic chromosome condensation; positive regulation of double-strand break repair; and positive regulation of reproductive process. Predicted to be located in nucleus. Expressed in muscle cell. Is an ortholog of human ALKBH4 (alkB homolog 4, lysine demethylase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F09F7.7a | |||||||
| F09F7.7b | |||||||||
| Corresponding_transcript | F09F7.7a.1 | ||||||||
| F09F7.7b.1 | |||||||||
| Other_sequence | CJC00337_1 | ||||||||
| PPC05491_1 | |||||||||
| Hbac_isotig04771 | |||||||||
| EX558897.1 | |||||||||
| EX548802.1 | |||||||||
| EX542608.1 | |||||||||
| ACC08414_2 | |||||||||
| CBC08889_1 | |||||||||
| EX559326.1 | |||||||||
| EX545984.1 | |||||||||
| EX558951.1 | |||||||||
| EX559739.1 | |||||||||
| AA618766.1 | |||||||||
| JI179203.1 | |||||||||
| EX555420.1 | |||||||||
| JI469754.1 | |||||||||
| PSC02780_1 | |||||||||
| HCC04818_1 | |||||||||
| HC00961 | |||||||||
| DIC01816_1 | |||||||||
| EX560870.1 | |||||||||
| GW412694.1 | |||||||||
| CR04948 | |||||||||
| EX537680.1 | |||||||||
| EX552235.1 | |||||||||
| EX549870.1 | |||||||||
| JO471837.1 | |||||||||
| PPC19124_1 | |||||||||
| CD455702.1 | |||||||||
| Dviv_isotig21766 | |||||||||
| Acan_isotig07546 | |||||||||
| DI02524 | |||||||||
| JI464456.1 | |||||||||
| WBC01182_1 | |||||||||
| CJC13461_1 | |||||||||
| Oden_isotig24541 | |||||||||
| Tcol_isotig06640 | |||||||||
| OVC00402_1 | |||||||||
| CRC11753_1 | |||||||||
| ACC18042_1 | |||||||||
| Tcol_isotig06641 | |||||||||
| Tcir_isotig05428 | |||||||||
| Associated_feature | WBsf651053 | ||||||||
| WBsf651054 | |||||||||
| WBsf981481 | |||||||||
| WBsf226695 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000792 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005260 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111927 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082381 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030723 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013003 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044164 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5704 | ||||||||
| Expr10729 | |||||||||
| Expr1018326 | |||||||||
| Expr1037438 | |||||||||
| Expr1148126 | |||||||||
| Expr2002356 | |||||||||
| Expr2020574 | |||||||||
| Drives_construct | WBCnstr00004168 | ||||||||
| WBCnstr00027406 | |||||||||
| Construct_product | WBCnstr00027406 | ||||||||
| Regulate_expr_cluster (5) | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (187) | |||||||||
| Interaction (284) | |||||||||
| Map_info | Map | III | Position | -1.54934 | |||||
| Positive | Positive_clone | F09F7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00046746 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056997 | |||||||||
| WBPaper00064973 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
