WormBase Tree Display for Gene: WBGene00010089
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| WBGene00010089 | SMap | S_parent | Sequence | F55B12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hpo-31 | Paper_evidence | WBPaper00038231 | |||||
| Person_evidence | WBPerson26 | ||||||||
| Sequence_name | F55B12.4 | ||||||||
| Molecular_name | F55B12.4 | ||||||||
| F55B12.4.1 | |||||||||
| CE26815 | |||||||||
| F55B12.4.2 | |||||||||
| Other_name | CELE_F55B12.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | hpo-31 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 26 Apr 2011 13:31:47 | WBPerson2970 | Name_change | CGC_name | hpo-31 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hpo | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00049382 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP5404 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to enable tRNA binding activity. Predicted to be involved in mitochondrial tRNA 3'-end processing and tRNA 3'-terminal CCA addition. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay. Is an ortholog of human TRNT1 (tRNA nucleotidyl transferase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080209 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17341) | ||||
| Molecular_info | Corresponding_CDS | F55B12.4 | |||||||
| Corresponding_CDS_history | F55B12.4:wp42 | ||||||||
| Corresponding_transcript | F55B12.4.1 | ||||||||
| F55B12.4.2 | |||||||||
| Other_sequence | HG00181 | ||||||||
| Oden_isotig04731 | |||||||||
| Tcir_isotig28093 | |||||||||
| Oden_isotig13608 | |||||||||
| FC544226.1 | |||||||||
| Acan_isotig08588 | |||||||||
| SR03858 | |||||||||
| TSC01812_1 | |||||||||
| JI459743.1 | |||||||||
| Dviv_isotig04832 | |||||||||
| SRC05107_1 | |||||||||
| Tcir_isotig15262 | |||||||||
| Oden_isotig13607 | |||||||||
| BMC07104_1 | |||||||||
| Dviv_isotig04828 | |||||||||
| Tcol_isotig09889 | |||||||||
| JI170765.1 | |||||||||
| FC545448.1 | |||||||||
| TS03144 | |||||||||
| EX552685.1 | |||||||||
| JI480432.1 | |||||||||
| FC819164.1 | |||||||||
| Dviv_isotig04827 | |||||||||
| Dviv_isotig04830 | |||||||||
| Dviv_isotig04831 | |||||||||
| Tcol_isotig09888 | |||||||||
| EX557910.1 | |||||||||
| ACC03535_1 | |||||||||
| HGC04151_1 | |||||||||
| Oden_isotig04732 | |||||||||
| Dviv_isotig04829 | |||||||||
| Associated_feature | WBsf662056 | ||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1013745 | ||||||||
| Expr1034403 | |||||||||
| Expr1152241 | |||||||||
| Expr2012571 | |||||||||
| Expr2030808 | |||||||||
| Drives_construct | WBCnstr00031676 | ||||||||
| Construct_product | WBCnstr00031676 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (75) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | V | Position | 5.64395 | Error | 0.014982 | |||
| Positive | Positive_clone | F55B12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061983 | |||||||||
| WBPaper00063971 | |||||||||
| WBPaper00064934 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
