WormBase Tree Display for Gene: WBGene00009973
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| WBGene00009973 | SMap | S_parent | Sequence | F53C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | decr-1.1 | Person_evidence | WBPerson261 | |||||
| WBPerson21017 | |||||||||
| Curator_confirmed | WBPerson555 | ||||||||
| Sequence_name | F53C11.3 | ||||||||
| Molecular_name | F53C11.3 | ||||||||
| F53C11.3.1 | |||||||||
| CE10908 | |||||||||
| Other_name | CELE_F53C11.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | decr-1.1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 20 Jan 2023 19:20:32 | WBPerson51134 | Name_change | CGC_name | decr-1.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | decr | ||||||||
| Allele (32) | |||||||||
| Strain | WBStrain00003032 | ||||||||
| WBStrain00037760 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00086558 | ||||||||
| 00086559 | |||||||||
| 00086560 | |||||||||
| 00086561 | |||||||||
| 00086562 | |||||||||
| 00086563 | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00011467 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012177 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable 2,4-dienoyl-CoA reductase (NADPH) activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in mitochondrion. Is an ortholog of human DECR1 (2,4-dienoyl-CoA reductase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53C11.3 | |||||||
| Corresponding_transcript | F53C11.3.1 | ||||||||
| Other_sequence | ES409642.1 | ||||||||
| ES739723.1 | |||||||||
| Tcir_isotig11325 | |||||||||
| EX558435.1 | |||||||||
| HCC08936_1 | |||||||||
| HBC22300_1 | |||||||||
| FC814502.1 | |||||||||
| PPC02828_1 | |||||||||
| EX013585.1 | |||||||||
| ES742894.1 | |||||||||
| CBC00219_1 | |||||||||
| CJC01245_2 | |||||||||
| AYC00156_1 | |||||||||
| CRC06813_1 | |||||||||
| Oden_isotig17430 | |||||||||
| NB06800 | |||||||||
| Tcir_isotig09503 | |||||||||
| EX912568.1 | |||||||||
| EX011836.1 | |||||||||
| ES411936.1 | |||||||||
| XI03001 | |||||||||
| ES413544.1 | |||||||||
| ES409871.1 | |||||||||
| FC813313.1 | |||||||||
| Oden_isotig17431 | |||||||||
| ES413340.1 | |||||||||
| CSC00469_1 | |||||||||
| FD514875.1 | |||||||||
| Tcol_isotig14175 | |||||||||
| EX014766.1 | |||||||||
| CJC01245_1 | |||||||||
| ES412330.1 | |||||||||
| EX914935.1 | |||||||||
| NBC05983_1 | |||||||||
| EX013798.1 | |||||||||
| Hbac_isotig02155 | |||||||||
| FC816186.1 | |||||||||
| HBC00320_1 | |||||||||
| Acan_isotig12460 | |||||||||
| HC08140 | |||||||||
| FD515173.1 | |||||||||
| CR04053 | |||||||||
| ES743929.1 | |||||||||
| FC810743.1 | |||||||||
| ES409698.1 | |||||||||
| ACC14677_1 | |||||||||
| FD516050.1 | |||||||||
| ES744406.1 | |||||||||
| EX011147.1 | |||||||||
| ES744360.1 | |||||||||
| XIC02343_1 | |||||||||
| AE01640 | |||||||||
| Associated_feature | WBsf647484 | ||||||||
| WBsf232826 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00065103 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048101 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032682 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102263 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015489 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (9) | |||||||||
| Drives_construct | WBCnstr00003532 | ||||||||
| WBCnstr00031774 | |||||||||
| Construct_product | WBCnstr00031774 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (195) | |||||||||
| Interaction (78) | |||||||||
| Map_info | Map | V | Position | 5.5873 | |||||
| Positive | Positive_clone | F53C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028482 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065140 | |||||||||
| Remark | Note that CGC_name decr-1.1 was previously incorrectly associated with F43C11.3 | Person_evidence | WBPerson21017 | ||||||
| Curator_confirmed | WBPerson555 | ||||||||
| WBPerson51134 | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
