WormBase Tree Display for Gene: WBGene00009078

WBGene00009078 SMap: S_parent: Sequence: F23B2
  Identity: Version: 2
    Name: CGC_name: rpb-12 Person_evidence: WBPerson1787
      Sequence_name: F23B2.13
      Molecular_name: F23B2.13a
        F23B2.13a.1
        CE20710
        F23B2.13b
        CE49689
        F23B2.13b.1
      Other_name (2)
      Public_name: rpb-12
    DB_info: Database: AceView gene 4J910
        WormQTL gene WBGene00009078
        WormFlux gene WBGene00009078
        NDB locus_tag CELE_F23B2.13
        Panther gene CAEEL|WormBase=WBGene00009078|UniProtKB=Q9U3I0
          family PTHR12056
        NCBI gene 184886
        RefSeq protein NM_001392364.1
            NM_069192.2
        TrEMBL UniProtAcc X5M5N4
            Q9U3I0
        UniProt_GCRP UniProtAcc Q9U3I0
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 08 Oct 2007 14:18:28 WBPerson2970 Name_change: CGC_name: rpb-12
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpb
    Allele (16)
    Strain: WBStrain00049346
    RNASeq_FPKM (74)
    GO_annotation (16)
    Ortholog: WBGene00040472 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
      WBGene00063906 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      SGD:S000001185 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0262954 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-070820-18 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:9198 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:102725 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2319895 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable DNA binding activity; DNA-directed 5'-3' RNA polymerase activity; and zinc ion binding activity. Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase I; transcription by RNA polymerase II; and transcription by RNA polymerase III. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Is an ortholog of human POLR2K (RNA polymerase II, I and III subunit K). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F23B2.13a
      F23B2.13b
    Corresponding_transcript: F23B2.13a.1
      F23B2.13b.1
    Other_sequence: TS02557
      TS05693
      AS09007
      TSC02650_1
      MIC07694_1
      HCC02880_1
      TS04885
      TS03204
      TS03431
      TS05436
      TS03085
      TSC05382_1
      ASC20231_1
      TS04780
      TS05144
      TS05486
      JI460715.1
      TS04425
      JI459080.1
      PTC04107_1
      TS03959
      TS04431
      TS04040
      TS05828
      ASC01686_1
      Name_isotig09628
      TS04528
      TS04235
      TS05226
      TS05776
      TS04585
      TSC02720_1
      TS03966
      ACC04007_1
      JO474932.1
      TS05064
      TS05089
      TS04901
      AI511579.1
      TS04697
      TS04759
      TS04371
      NBC03751_1
      TS03278
      TS02325
      TS01596
      TS05975
      TS02145
      TS04057
      TS04905
      RSC00263_1
      PPC04673_1
      TS05635
      TS04737
      TS05563
      MC04689
      TS05194
      TS05405
      MCC02756_1
      NB10017
      TS05531
      GPC02249_1
      TS05350
      TS05294
      Oden_isotig12609
      TS03906
      TS03925
      TS04359
      TS04959
      TS04349
      TS05814
      TS04017
      TS01929
      HCC12497_1
      TS04980
      TS05980
      HGC02530_1
      TS01838
      TS05037
      TS04342
      TS05515
      TS04965
      TS05249
      TS05826
      TS04172
      BU666084.1
      TS04415
      TS00270
      TS04679
      TS05363
      NB06758
      TS04256
      TS03967
      TS05271
      TS04782
      TS03049
      TS05091
      TS02472
      TS04031
      TS04123
      TS02374
      AS00356
      TS05672
      AW203897.1
      TS04028
      TS02614
      TS04888
      BMC01908_1
      TS05188
      TS05053
      TS04231
      TS05391
      TS05488
      TS05374
      TS04572
      TS02976
      TS05186
      TS04135
      TS03244
      TS04303
      TS05134
      TS04054
      TS04970
      TS05760
      TS04722
      TS04808
      TS01549
      TS04692
      TS05933
      MJC01174_1
      TS04650
      TS04597
      TS03849
      OVC01901_1
      Dviv_isotig33248
      TS00388
      BU088933.1
      TS05044
      TS05506
      TS02498
      TS03989
      FE916262.1
      TS05968
      TS04120
      TS04876
      TS01868
      TS04884
      EX913112.1
      TS04376
      TS05288
      TS01346
      CD203392.1
      TS04133
      CBC13062_1
      AE02506
      AS06627
      HG02658
      TS03656
      TS05317
      TS03964
      TX00018
      TS04127
      TS05283
      TS04203
      TS04068
      TS04676
      CJC06726_1
      TS05645
      TS02980
      TS04588
      Tcir_isotig11162
      TS05711
      TS04643
      TS01414
      TS05059
      TS05638
      TS04153
      TS04141
      TS01893
      TS04113
      TS05057
      TS02509
      TS04729
      Acan_isotig17750
      TS04067
      TS03732
      TS03168
      TS05917
      TS04226
      TS05524
      TS04664
      TCC00504_1
      TS05068
      JI476623.1
      HC09766
      TS04600
      TS04277
      FE914187.1
      TS04973
      TS05403
      TS03923
      TS02551
      TS04360
      TS05857
      TS02478
      TS01903
      AE02370
      TS05106
      AI239319.1
      TS04087
      DN556830.1
      TS05171
      TS03141
      TS03066
      TS04674
      TS04677
      TS05256
      Oden_isotig12610
      TS05103
      TS04602
      TS03157
      TS02286
      OOC03692_1
      TS02051
      TS04504
      TS04474
      TS04327
      TS05798
      TS04688
      FE913571.1
      TS04841
      TS03802
      GE626251.1
      TS02567
      TS04149
      NAC00830_1
      Tcol_isotig23796
      HG11752
      TS05232
      TS05181
      AS13824
      TS05291
      TS02634
      Oden_isotig12611
      TS04631
      HC09726
      MI08294
      TS04098
      AYC00944_1
      TS05045
      LSC00224_1
      TS03833
      MJ02169
      TS04996
      TS04656
      JI483764.1
      TS04596
      TS04581
      TS05141
      TS02322
      TS04435
      Oden_isotig16455
      Name_isotig06553
      MC02993
      TS04897
      TS03887
      TS03872
      TS04252
      TS02321
      TS04561
      TS04547
      TS04567
      TS01569
      TS00765
      TS01151
      TS01989
      TS04769
      TS05865
      Tcir_isotig15461
      PP00706
      TS04345
      TS03915
      TX00014
      TS05140
      HC04443
      Oden_isotig16454
      TS03882
      PT00543
      TS05176
      TS05633
      TS04417
      TS05063
      TS04074
      TSC05666_1
      HBC21631_1
      TS04981
      TS03927
      AS02919
      TS05282
      TS05365
      TS04001
      TS03951
      TS04396
    Associated_feature: WBsf652039
      WBsf997367
      WBsf230514
  Experimental_info: RNAi_result (20)
    Expr_pattern: Expr1013932
      Expr1033954
      Expr1149312
      Expr2015421
      Expr2033656
    Drives_construct: WBCnstr00032482
    Construct_product: WBCnstr00032482
    Microarray_results (17)
    Expression_cluster (115)
    Interaction (159)
  Map_info: Map: IV Position: 4.06918 Error: 0.005755
    Positive: Positive_clone: F23B2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029038
    WBPaper00038491
    WBPaper00055090
    WBPaper00059527
    WBPaper00065275
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene