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WormBase Tree Display for Gene: WBGene00004497

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Name Class

WBGene00004497SMapS_parentSequenceY41D4B
IdentityVersion1
NameCGC_namerps-28
Sequence_nameY41D4B.5
Molecular_nameY41D4B.5
Y41D4B.5.1
CE21842
Other_nameCELE_Y41D4B.5Accession_evidenceNDBBX284604
Public_namerps-28
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrps
AlleleWBVar01499166
WBVar00184333
WBVar00184334
WBVar00184335
WBVar01499633
WBVar01450844
WBVar01500231
WBVar01481287
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rps28 using blastP
RNASeq_FPKM (74)
GO_annotation (18)
Contained_in_operonCEOP4640
Ortholog (21)
Structured_descriptionConcise_descriptionrps-28 encodes a small ribosomal subunit S28 protein.Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; maturation of SSU-rRNA; and ribosomal small subunit assembly. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane. Predicted to be part of cytosolic small ribosomal subunit and polysomal ribosome. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 15 with mandibulofacial dysostosis. Is an ortholog of human RPS28 (ribosomal protein S28).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0111894Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10418)
Molecular_infoCorresponding_CDSY41D4B.5
Corresponding_transcriptY41D4B.5.1
Other_sequencePPC03881_1
JI215187.1
AE02349
AS12863
MI06130
GQ422263.1
AS11223
ASC35449_1
Tcol_isotig07074
AS12437
MC04848
FE918869.1
GQ422260.1
Dviv_isotig28907
AS07469
GR18863
AS11291
AS16888
FE919470.1
ACC00555_1
NAC00553_1
NB09797
AS17098
NB06718
CK850475.1
TX01963
AS07670
AS12881
FE914802.1
AS17207
Tcir_isotig22301
DI02362
AS13412
GR10419
GRC00335_1
HC04831
AS11284
Tcol_isotig23232
JI181925.1
AS16813
AS11499
FE920218.1
HC04744
NB08504
HC03007
NB09465
HC04843
CB043329.1
MI08133
AS17249
BU089270.1
AS10666
ES742880.1
AS10742
AS13965
Tcir_isotig16391
AS10873
AS11628
AS07787
NB08566
AE02592
CB043411.1
Oden_isotig28256
FE913915.1
AE03240
CK850162.1
RSC00242_1
AS05781
AS13492
AE02379
JI212303.1
ES741542.1
GQ422257.1
JI212551.1
HC03031
HC04850
AS11194
MP02196
TX01975
ASC34175_1
NBC03182_1
DN557088.1
MJ01400
AS16960
AS13451
FE911373.1
BMC12238_1
Acan_isotig20176
AS13896
CB043308.1
AS17274
AS17102
PP00477
XIC00684_1
FE907804.1
ACC13199_1
AS17847
NB09974
XI00820
EF634999.1
CN478296.1
AS11205
AS14452
FE918427.1
AS13535
AS17255
NB09929
HC02689
LSC00400_1
TX02005
XI00091
NB07983
AS16648
AS11237
AS16886
AS10701
FE917440.1
AS17177
EF634995.1
MPC00230_1
HC04360
CJC05139_1
AS13818
HC02943
CB043413.1
GR18862
CB043776.1
ES413956.1
ES880444.1
AS16750
AS10698
AS10984
AS11242
Tcir_isotig29030
HC03474
BG438365.1
AS12805
ES412361.1
HC04769
CB043400.1
AS10790
CK850328.1
MC00550
AE01773
GPC01049_1
AS17330
ES741908.1
BM517224.1
AS03451
MIC09454_1
AS17123
LSC01214_1
FE913570.1
FE920284.1
FE919593.1
SS01391
AS11506
FE906289.1
HC04409
TX02027
AS13424
PT03989
AS13557
AS17360
EX910343.1
PTC03214_1
AS13947
AS12012
AS17417
JI174009.1
ASC00705_1
HCC00628_1
AS10752
HC04798
AE02637
TX01761
FG618944.1
HC09519
AS11160
HC09848
EX008946.1
AS13982
AS07745
MJ01041
FC543583.1
GP00385
AS11368
AS11737
FE909524.1
HC04804
ASC02696_2
CR12658
EF634991.1
AS10862
AS17194
AS14220
GQ422258.1
MHC02962_1
AS08128
CJC05997_1
EF634990.1
AS16922
PT03872
FE918790.1
ES411992.1
FE908276.1
AS13897
AS17284
AS17449
AS02416
AS13012
TLC00088_1
AS16680
HC03944
TX00388
EY471276.1
AS12817
AS01182
HC03786
AS05968
GQ422254.1
GQ422262.1
PT04114
HC04810
FE909889.1
HC02911
ES744363.1
GW407774.1
ES412691.1
AS14314
DI02420
AS13186
EL784544.1
GR20071
HC04768
AS17006
AF052590.1
AS11279
EF635002.1
EX014452.1
AS11549
EF634988.1
AS10937
CB043580.1
NB08565
AS13667
AS12100
AS16887
TX01980
AS10923
AS10610
AS00209
EF635001.1
AS11240
AS13037
FE911907.1
HC04888
AS11190
FE910470.1
AS15526
ACC39871_1
AS13616
MP01278
AS10843
CJC04476_1
GQ422261.1
HG06257
HC04901
AS10633
MJ01040
PPC00030_1
AS17397
HC04459
HC03477
AE02614
PTC03888_1
EX914120.1
GT570930.1
PT03794
AS11998
AS05114
EF634993.1
FE911003.1
HC03551
AS17241
RSC00187_1
JI473356.1
EX012171.1
MJ01078
FE919188.1
AS11706
AS11283
GO251719.1
MH06692
GQ422268.1
MJC00008_1
AE03312
BU666441.1
NB09692
EF635004.1
HC04728
MP02175
GQ422264.1
DI02517
ACC30436_1
HC03577
ASC35193_1
XI00123
EF635005.1
PSC00053_1
HC09431
ZPC00170_1
AS13257
FC540454.1
EX912507.1
HGC00343_1
AS10613
FE916703.1
AS16865
AS16789
EF634998.1
AS13267
HC07511
HBC18186_1
AS16634
EX008574.1
AS04543
FE919655.1
MI08228
HCC00746_1
EF635000.1
AS17339
GR20072
GQ422267.1
HC04132
FE919963.1
HG11287
ASC01694_1
OOC03139_1
XIC00789_1
GW408423.1
TX01754
EF634994.1
AS14454
AS16833
FE918801.1
AS10755
CB043415.1
AS17453
TDC00043_1
MCC05748_1
ASC15815_2
NB08506
HC04448
FE919390.1
ASC13678_1
EX013955.1
MH06533
AE02915
MPC01714_1
AE01951
BU087761.1
AS14036
AS11150
HC03560
BG467832.1
AS04693
AS13674
AS13322
CN478236.1
AS08194
ZPC00207_1
AS06282
EF634992.1
AS16736
MIC00934_2
Tcol_isotig24640
CK726238.1
EX913066.1
FE911051.1
FC546609.1
EX916427.1
PT04514
AS17395
AS14528
AS13677
FE917604.1
ASC02815_1
AS17299
EF634989.1
CB043099.1
AS13756
HC03016
FE910058.1
NBC00345_1
AE02890
AS10903
AS12051
AS16641
Tcol_isotig07076
AS03866
AS00176
AS17322
RS08193
PT04000
BUC00245_1
DIC01725_1
AS04586
TX01942
EF635003.1
CJC03646_1
NB08505
AS15402
EX007221.1
Tcol_isotig07073
AI046020.1
AS11767
AS17342
GPC00915_1
FE918696.1
AS13802
CJC06658_1
AS13349
JI248267.1
CBC02287_1
AS11136
SSC00973_1
FE918890.1
HC04312
AYC00455_1
MC05747
GQ422265.1
PT03697
CR00493
AS10757
OVC00610_1
AS15013
AS13926
AS13507
AS04598
FE909460.1
MH10603
AS11833
AS11748
NB08209
AS13112
AS17048
WBC01445_1
HC03520
AS04920
GQ422259.1
HC09782
FE919955.1
HC04795
AS10621
AS11772
ASC14797_1
AS16855
DI02279
AS12829
AE01662
MC00619
FE916555.1
HC04878
HC04753
AS12733
AS07455
HG03446
PT04007
AM743420.1
AS05025
ES744571.1
NB08930
AS11078
NB08913
FE914350.1
AS11757
MJ01437
EF634996.1
GQ422266.1
AS11826
XI00109
AS14324
ES739283.1
AS07934
ES411372.1
Hbac_isotig07674
HC04764
AS13861
FE909397.1
EF634997.1
AS13337
AS10656
BM517207.1
AS17409
Tcol_isotig07075
GQ422256.1
GQ422255.1
EY467266.1
ASC36240_1
AS09785
GO250472.1
AS11263
HG09894
NB09461
CB043074.1
Associated_featureWBsf645812
WBsf981675
WBsf995500
WBsf995501
WBsf995502
WBsf995503
WBsf1016769
WBsf1016770
WBsf227967
WBsf227968
Experimental_infoRNAi_result (22)
Expr_pattern (5)
Microarray_results (18)
Expression_cluster (177)
Interaction (169)
Map_infoMapIVPosition-16.2539Error0.005704
PositivePositive_cloneY41D4BInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00035149
WBPaper00038491
WBPaper00049828
WBPaper00055090
WBPaper00062388
WBPaper00065026
Remarkrps-28 is described as "Orthologous to yeast (S.cerevisiae) ribosomal protein rps28 using blastP". BlastP of C. elegans with sp|P02380|RS28_YEAST gives the hit Y41D4B.5Person_evidenceWBPerson567
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene