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WormBase Tree Display for Gene: WBGene00004478

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Name Class

WBGene00004478SMapS_parentSequenceF40F8
IdentityVersion1
NameCGC_namerps-9
Sequence_nameF40F8.10
Molecular_nameF40F8.10
F40F8.10.1
CE05849
Other_nameCELE_F40F8.10Accession_evidenceNDBBX284602
Public_namerps-9
DB_infoDatabaseAceViewgene2L416
WormQTLgeneWBGene00004478
WormFluxgeneWBGene00004478
NDBlocus_tagCELE_F40F8.10
PanthergeneCAEEL|WormBase=WBGene00004478|UniProtKB=Q20228
familyPTHR11831
NCBIgene174699
RefSeqproteinNM_063983.6
SwissProtUniProtAccQ20228
TREEFAMTREEFAM_IDTF300795
UniProt_GCRPUniProtAccQ20228
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrps
Allele (21)
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rps9 using blastP
RNASeq_FPKM (74)
GO_annotation (20)
Ortholog (39)
ParalogWBGene00016740Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionrps-9 encodes a small ribosomal subunit S9 protein.Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in cytoplasm; nucleolus; and ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS9 (ribosomal protein S9).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF40F8.10
Corresponding_transcriptF40F8.10.1
Other_sequenceTcir_isotig07189
MI08065
FC812029.1
MI08775
NAC00637_1
EH005587.1
ES741217.1
CBC11399_1
SS00810
XIC00839_1
EX009615.1
ES568803.1
ES409253.1
ES740875.1
Dviv_isotig17047
CJC00091_1
ES413085.1
BF599269.1
SC00784
SSC04073_1
AI132839.1
MCC03916_1
AS00108
MP02129
CN478061.1
RSC00103_1
AYC00307_1
FE912281.1
ES741655.1
AE01813
FE916800.1
GR978428.1
AS03039
MI08846
BE132564.1
BE125003.1
MI08926
MP01478
EX006978.1
JO474923.1
ES570692.1
ES739042.1
JI175636.1
XI05409
FE906979.1
ES743811.1
XIC03973_1
GO251073.1
FE916754.1
ES570727.1
Dviv_isotig17046
GW407738.1
CJC00110_1
NBC00015_1
AE01092
FC821670.1
EX915079.1
BM517318.1
BU087965.1
ES739795.1
EX915786.1
AE01258
MP01569
MI09048
MPC00505_1
CR02867
WBC00164_1
HC02323
EX914986.1
CR12018
Tcir_isotig07375
BXC00581_1
MI07707
ES570707.1
MC00907
ASC13734_1
MI02187
AYC01547_1
FC812342.1
ES740805.1
MIC05257_1
AW409483.1
PP00620
ES411782.1
EX011821.1
EX915295.1
EX914109.1
CBC10730_1
HBC00708_1
Oden_isotig17804
ES409906.1
SSC04029_1
AS03975
EG025522.1
ES741912.1
AE00345
MP01514
BMC18430_1
EX915271.1
ES742333.1
EY468111.1
MI08935
Name_isotig02555
CJC00580_2
ES570719.1
EX012305.1
EX006952.1
GE626264.1
FG620193.1
EX013142.1
Tcol_isotig15612
ASC00359_1
EX014736.1
BM01557
MP02159
LSC00204_1
Name_isotig09557
EX008107.1
AI124415.1
JI176131.1
MI08664
EX010234.1
CD374170.1
CB043299.1
CBC01198_1
Hbac_isotig04368
ASC29336_1
Oden_isotig17803
MJ00148
GR11874
EY462999.1
MIC05257_2
PEC00007_1
EX556141.1
FC810866.1
EX014076.1
ES564191.1
CN478190.1
FE910973.1
CN478125.1
BE491834.1
PSC04887_1
EX912082.1
ACC00803_1
ES408635.1
ES743864.1
CR07625
OOC00239_1
SSC00229_1
NB07746
EX912214.1
ES743456.1
FC821051.1
FE915352.1
NB08483
ES413281.1
CR09675
BF824695.1
DIC01697_1
HC04340
ES739555.1
MJC00272_1
BUC01054_1
ES411571.1
FC809927.1
BU088779.1
TSC07174_1
PT00642
BU666792.1
AS03051
MP02089
EX014443.1
SR05261
EX013040.1
BMC01891_1
EX010498.1
Acan_isotig05453
DN556806.1
MI09055
TX01918
OVC00938_1
ES741427.1
MI09066
ES740226.1
TDC00261_1
MI08632
BE581992.1
ES744560.1
AS07663
AS04030
EX009028.1
FE915812.1
CJC07666_1
CJC00692_1
BU666260.1
XI01187
SSC05862_1
ES742283.1
CR01275
GR19798
CRC00061_1
EX007084.1
SRC00162_1
PPC00028_1
BM517348.1
AS17777
FE916920.1
HBC27991_1
BU088361.1
PE00016
HCC00634_1
AW351421.1
FE916810.1
ES744540.1
SS01551
ES562961.1
CR12279
DI02383
SRC03206_1
EG025447.1
ZPC00095_1
BE491811.1
FG589275.1
HG00366
FG620079.1
ES740769.1
SR01062
EX008612.1
BG467977.1
TCC00227_1
HGC11259_1
FC811874.1
EX007267.1
PTC03319_1
CR11755
GRC00011_1
AIC00299_1
Associated_featureWBsf650546
WBsf650547
WBsf666117
WBsf666118
WBsf666119
WBsf989631
WBsf1013165
WBsf223894
Experimental_infoRNAi_result (45)
Expr_patternExpr1026473
Expr1032281
Expr1150739
Expr2015533
Expr2033768
Microarray_results (21)
Expression_cluster (162)
Interaction (251)
Map_info (3)
Reference (12)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene