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WormBase Tree Display for Gene: WBGene00004456

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Name Class

WBGene00004456SMapS_parentSequenceY48B6A
IdentityVersion1
NameCGC_namerpl-43
Sequence_nameY48B6A.2
Molecular_nameY48B6A.2
Y48B6A.2.1
CE22117
Other_nameCELE_Y48B6A.2Accession_evidenceNDBBX284602
Public_namerpl-43
DB_infoDatabaseAceViewgene2O445
WormQTLgeneWBGene00004456
WormFluxgeneWBGene00004456
NDBlocus_tagCELE_Y48B6A.2
PanthergeneCAEEL|WormBase=WBGene00004456|UniProtKB=Q9U2A8
familyPTHR48160
NCBIgene175070
RefSeqproteinNM_064556.7
SwissProtUniProtAccQ9U2A8
TREEFAMTREEFAM_IDTF313068
UniProt_GCRPUniProtAccQ9U2A8
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpl
Allele (9)
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rpl43 using blastP
StrainWBStrain00008594
RNASeq_FPKM (74)
GO_annotation00098976
00098977
00098978
00098979
00098980
00112925
00112926
00112927
Contained_in_operonCEOP2697
Ortholog (41)
Structured_descriptionConcise_descriptionrpl-43 encodes a large ribosomal subunit L37a protein.Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable metal ion binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL37A (ribosomal protein L37a).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY48B6A.2
Corresponding_transcriptY48B6A.2.1
Other_sequenceCRC00206_1
GO248991.1
EX912950.1
MCC02305_1
GW408965.1
EX011280.1
GW411933.1
GW411872.1
BU666295.1
PPC00743_1
TX00822
AS08229
DV019687.1
ES741843.1
HG03355
ES740794.1
GW407769.1
FG621040.1
CN478025.1
CN478012.1
Acan_isotig18638
SRC00734_1
PPC05690_1
EX912977.1
GR978392.1
OVC01095_1
ASC06820_2
PT00674
MPC00140_1
GR977272.1
PSC00047
ES741902.1
MA00020
CB043380.1
BU086998.1
FE912357.1
MC01125
ACC02440_1
ES411113.1
CK854697.1
FE905744.1
ES412122.1
CN478035.1
NB07734
BE132460.1
CK726123.1
CK850065.1
CB035441.1
EX009108.1
BG734493.1
FC815787.1
FE911508.1
AA294160.1
AM743839.1
AS06883
Dviv_isotig21825
EX013784.1
PEC00059_1
EX008386.1
HC02338
GW406929.1
FE913545.1
TX00823
DAC02630_1
JI460840.1
CB043354.1
HBC03444_1
CSC01151_1
CK854680.1
CJC13775_1
AE00378
AF052737.1
ES566939.1
HCC00623_1
AI308658.1
HC03794
FE919146.1
ES744321.1
PTC03498_1
AI239269.1
EX009828.1
NAC00963_1
RS09134
ES743809.1
PE00022
Tcir_isotig10999
BUC00580_1
HS00373
ACC03966_1
CB043649.1
GW412188.1
Tcol_isotig22623
AI308657.1
FE919938.1
EF094466.1
CK726228.1
GW411751.1
BE132565.1
HG01910
JI462668.1
OOC03049_1
AS08217
FE908917.1
Hbac_isotig06915
HC00564
ES741978.1
GW407001.1
MH10190
CK726431.1
HCC07776_1
MI02234
MP00169
BMC17222_1
FE918684.1
CK855200.1
PP00393
MAC00830_1
EX010087.1
MH02578
MHC02832_1
FE909730.1
CK854734.1
ZPC00007_1
JI257332.1
SC00813
DIC01718_1
FC810386.1
CK850086.1
SR00953
JI257396.1
EX916209.1
FE911661.1
PSC00370
PT00309
Tcir_isotig04259
ES742075.1
FG580101.1
GW412521.1
TCC00224_1
GW409248.1
CB043694.1
GW412823.1
TDC02555_1
CK854809.1
FE911093.1
GR977494.1
Oden_isotig27249
MP02066
GR978140.1
EX014914.1
HC04876
HC01280
GR979035.1
MA00023
GR979046.1
AE01289
MC00825
CB043421.1
BU088570.1
AYC00116_2
CBC00349_1
HC03579
FE919598.1
GE637801.1
GT570944.1
CR05867
HGC01123_1
TIC00069_1
FC811725.1
ACC00274_1
GW409940.1
ES743846.1
FE911201.1
ASC29733_1
FG582729.1
Tcir_isotig04260
GR18909
PTC03330_1
HBC12845_1
FG583625.1
GR17386
EX013513.1
MC05025
NBC00758_1
GR978413.1
OOC03802_1
CB043183.1
FE918929.1
NB08541
AS06723
GW413229.1
RSC00057_1
BF727635.1
HC03766
Dviv_isotig21824
AI665770.1
EX011051.1
AW562226.1
GR978425.1
GR978402.1
FC812824.1
ES741756.1
GR11817
ODC00173_1
AJ616435.1
CB043300.1
WBC00254_5
TX01851
GW410541.1
GW410253.1
FE919599.1
FE909677.1
MA01050
GRC00384_1
GW406843.1
HGC06734_1
ES413844.1
ES742778.1
HCC00623_2
TSC11215_1
AS07751
ES742821.1
SC01219
FE910195.1
HC03515
AS02803
TDC00093_1
CB043121.1
HS00046
MJ00147
FD514236.1
FC817298.1
Name_isotig06423
BU089116.1
MJC00263_1
AI815301.1
MI02493
GR18908
GO249333.1
AM157893.1
HSC01594_1
DN558312.1
GW407863.1
HBC04747_1
CB043517.1
EX011992.1
GW412497.1
FG621039.1
FE911568.1
HS01547
AYC00116_1
GR978991.1
DA04741
ASC06820_1
HC03747
HBC01249_1
CK855204.1
EX012200.1
MIC00340_1
AI313807.1
CR11566
FE909792.1
EX911689.1
AW288106.1
ES740427.1
HO243930.1
FC815930.1
CRC02302_1
MCC05823_1
CK726174.1
EX915357.1
FE918950.1
MI01284
CB043531.1
GW413305.1
GW408582.1
HCC06161_1
SC00192
ES743743.1
Tcir_isotig24421
CBC05326_1
FE919154.1
DI02413
FE909693.1
PTC00707_1
GR979045.1
BXC03150_1
FC815675.1
ES411098.1
ES744107.1
WBC03047
GW409783.1
FC818515.1
CK725639.1
LSC01125_1
GW409103.1
TCC02224_1
CB043468.1
GR977357.1
BG310544.1
CB043053.1
BMC01949_1
Associated_featureWBsf644831
WBsf654850
WBsf658390
WBsf222425
WBsf222426
WBsf222427
Experimental_infoRNAi_resultWBRNAi00056880Inferred_automaticallyRNAi_primary
WBRNAi00009353Inferred_automaticallyRNAi_primary
WBRNAi00026752Inferred_automaticallyRNAi_primary
WBRNAi00033396Inferred_automaticallyRNAi_primary
WBRNAi00111880Inferred_automaticallyRNAi_primary
Expr_patternExpr1017921
Expr1032259
Expr1160332
Expr2015477
Expr2033712
Microarray_results (25)
Expression_cluster (145)
Interaction (174)
Map_infoMapIIPosition22.4552Error0.003479
PositivePositive_cloneY48B6AInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00025088
WBPaper00028564
WBPaper00038491
WBPaper00045184
WBPaper00049828
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene