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WormBase Tree Display for Gene: WBGene00004453

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Name Class

WBGene00004453SMapS_parentSequenceC26F1
IdentityVersion1
NameCGC_namerpl-39
Sequence_nameC26F1.9
Molecular_name (3)
Other_name5I256Accession_evidenceEMBLAF303271
CELE_C26F1.9Accession_evidenceNDBBX284605
Public_namerpl-39
DB_infoDatabaseAceViewgene5I256
WormQTLgeneWBGene00004453
WormFluxgeneWBGene00004453
NDBlocus_tagCELE_C26F1.9
PanthergeneCAEEL|WormBase=WBGene00004453|UniProtKB=P52814
familyPTHR19970
NCBIgene179153
RefSeqproteinNM_001392549.1
SwissProtUniProtAccP52814
TREEFAMTREEFAM_IDTF300223
UniProt_GCRPUniProtAccP52814
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpl
Allele (11)
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rpl39 using blastP
RNASeq_FPKM (74)
GO_annotation00047874
00047875
00047876
00112919
00112920
00112921
Ortholog (21)
Structured_descriptionConcise_descriptionrpl-39 encodes a large ribosomal subunit L39 protein.Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL39 (ribosomal protein L39) and RPL39P5 (ribosomal protein L39 pseudogene 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC26F1.9
Corresponding_transcriptC26F1.9.1
Other_sequenceMI02492
Tcol_isotig21977
BU086819.1
BE125004.1
NB09973
AS13498
HC07663
HC03519
GP03201
MI08091
CB043349.1
ES413250.1
MH06670
HC04801
AS17070
HG11624
HC07194
HCC01957_1
HC07898
ALC00101_1
AE02628
ES409428.1
HG05972
SS01456
RSC00070_1
EX008583.1
HC07355
BM01462
PT04136
FC820828.1
RSC00111_1
FG348223.1
NBC02210_1
FC821504.1
HC07835
HC07540
HC09450
PPC03416_1
HG06334
HC07181
AS14626
MJ00151
CB043212.1
BU087560.1
HC07931
AS14081
HC03557
HC03572
MI02579
MH02377
AS13866
HC07717
HC08296
MHC02800_1
MC04671
ASC22259_1
HC04717
FC821470.1
DN557607.1
HBC24084_1
HC07164
HC07255
Acan_isotig21412
HC07424
CB043191.1
EF634828.1
HC08244
CB043332.1
HC04337
HC07153
MC05892
HC07494
MH06861
HC05319
EF634832.1
AS14766
AS11723
MJ01454
Oden_isotig16870
MIC07379_1
HC07139
MC05824
HC07503
HC07260
Tcir_isotig19107
HC09657
TX01996
HC07189
XIC00717_1
AA293948.1
PTC03937_1
HC01463
MC05224
HC00997
AS13848
MI09073
HC00111
OOC03230_1
HC03506
HC07930
HC07950
TCC00407_1
HC09790
MH09180
AS13546
GR13838
AYC00335_1
MJ00976
EX916573.1
FG589434.1
HC08322
EF634827.1
HC04507
HG06217
HC07222
HC07567
HC07405
FE916534.1
HC07927
BU087337.1
CB043294.1
GPC02489_1
HC07943
MH06384
AS11970
PT04079
AE01522
HG05980
MH09261
MP00502
HC07949
PP00169
HC04817
AE02418
HC02926
AS07656
MC05837
ES743997.1
XI02077
HCC12658_1
MC05128
HC07146
AS06016
HG06085
SSC00746_1
CBC01776_1
AS10367
AE02910
AS05889
HC04745
MH09298
HC04814
HC07160
NB08790
AS06043
HG05962
BM01059
HC03487
HC03686
MI07129
TX01738
NB11500
HSC00574_1
HC08115
HC07749
EF634826.1
AS16969
MAC01864_1
AS14501
HC08207
MC04996
MI06949
CB043725.1
EF634822.1
EX008344.1
HC07875
GR19888
Dviv_isotig13517
HC04033
AS10640
AS17301
MIC00620_2
HC02916
CJC05086_1
CN478249.1
EF634834.1
HC08318
HC04784
AE02544
HG11098
HCC01966_1
AS13743
AE00477
AS13958
AS02357
FE911400.1
EX012993.1
AS12556
FE913291.1
FE920254.1
AS13518
FC820952.1
HS00174
HC07372
HC07412
BMC03260_1
HC04819
OVC00464_1
BU585485.1
MCC05271_1
EX914308.1
NB09830
EX010577.1
HC07984
BU088024.1
Oden_isotig16869
MC05266
SRC09104_1
MC04955
AS14577
EF634824.1
HC07246
PT04590
HC03648
CJC16847_1
AS11611
MJ01563
HC07296
AS13952
HC07428
AE02899
HC02920
HC07957
NB08670
FE919071.1
EF634829.1
HC07396
EF634817.1
BMC01857_1
AS11227
DA05852
EF634830.1
MH06665
MH09197
AS17252
CB043463.1
HC08214
HG05912
ES409202.1
AS12834
GW407983.1
HG12175
HC08149
EX011433.1
AS11354
ASC22433_1
AS16744
HC04731
EF634820.1
AS17084
MC05881
MC04750
BG467769.1
HC07672
FK670280.1
HC07425
AS13619
HC07852
AS13261
ACC00506_1
HC05154
EF634825.1
MPC01712_1
DAC02587_1
CB043149.1
HC07607
AS17009
HG05848
BU088979.1
BQ834013.1
AS13740
HC04716
HC07470
HC07865
GO240400.1
AS16681
HC04430
ASC01493_1
AS11781
PTC03516_1
MC05845
DN557779.1
HC00151
AS17434
CN478233.1
AS10934
HBC01710_1
SR00825
MC05832
HCC08774_1
HGC02303_1
HC07579
HC07580
AS17426
FE910337.1
CBC03137_1
MJC00061_2
HC02998
AS11326
CB042985.1
HC07453
FE909196.1
NAC00507_1
PT04049
CBC01476_1
NB09026
HC08026
MJ01187
HG12125
Tcir_isotig21077
HC07420
CJC04399_1
MI08426
EF634833.1
AS13718
EF634819.1
BM517380.1
MJC00061_1
AS17027
HC07378
CB038590.1
EX912772.1
AE02248
AE02017
HC04725
NB10006
AS17334
FE920310.1
PPC04181_1
EF634823.1
BU087029.1
HG02185
JI181252.1
HC02949
HC04719
AS08048
AS17439
AE01656
HC02910
MI08363
HC02953
HC04833
ASC02835_1
AS11919
AS07055
FE916335.1
HC07747
CB035426.1
MI06705
HC04095
HC07313
AS13590
PPC01941_1
HC07985
PSC00667_1
BU086741.1
HCC01966_2
HC08062
BM517309.1
HC08071
MI00769
HC07253
MA02583
AE02442
MJ01516
MC05389
MC05008
HC08054
FE919273.1
AS17206
HC08006
HC08278
HC04747
AE02094
HC07131
HGC00776_1
EX009008.1
AS16985
HC03484
BU087400.1
HC07140
FC820973.1
EF634818.1
HC07966
ES743820.1
TX00371
HC07329
HC03570
HC07264
LSC00728_1
FC821145.1
EF634831.1
HC07920
MIC00620_1
HC08009
HC03550
HC04743
MH07007
EF634821.1
AS10891
AS12693
EX009737.1
MJ00914
MC04696
EX910960.1
EX010105.1
CB042928.1
HG06242
GRC02334_1
HC07206
JI257375.1
HC09843
TDC00076_1
ASC32932_1
AE02366
MH09240
BM517372.1
GR13197
HC07988
HC07553
HC03559
MC05180
Tcir_isotig06019
HC04797
Hbac_isotig07394
HBC20441
HCC05124_1
HC07292
HC07614
HCC00626_1
CBC07801_1
AS10658
SRC00018_1
EX916746.1
MH06746
NB08643
CB043144.1
MI08277
Associated_featureWBsf652791
WBsf652792
WBsf669132
WBsf1019950
WBsf233986
Experimental_infoRNAi_resultWBRNAi00094070Inferred_automaticallyRNAi_primary
WBRNAi00008443Inferred_automaticallyRNAi_primary
WBRNAi00072951Inferred_automaticallyRNAi_primary
WBRNAi00072949Inferred_automaticallyRNAi_primary
WBRNAi00033486Inferred_automaticallyRNAi_primary
WBRNAi00085642Inferred_automaticallyRNAi_primary
WBRNAi00024646Inferred_automaticallyRNAi_primary
WBRNAi00041286Inferred_automaticallyRNAi_primary
WBRNAi00064931Inferred_automaticallyRNAi_primary
WBRNAi00072950Inferred_automaticallyRNAi_primary
Expr_patternExpr1016181
Expr1032257
Expr1145327
Expr2015472
Expr2033707
Drives_constructWBCnstr00035473
Construct_productWBCnstr00035473
Microarray_results (17)
Expression_cluster (128)
Interaction (198)
Map_infoMapVPosition0.888062
PositivePositive_cloneC26F1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
[200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (0.88)
MethodGene