WormBase Tree Display for Gene: WBGene00004439

WBGene00004439 SMap: S_parent: Sequence: F52B5
  Identity: Version: 1
    Name (5)
    DB_info: Database: AceView gene 1I906
        WormQTL gene WBGene00004439
        WormFlux gene WBGene00004439
        NDB locus_tag CELE_F52B5.6
        Panther gene CAEEL|WormBase=WBGene00004439|UniProtKB=Q20647
          family PTHR11620
        NCBI gene 172617
        RefSeq protein NM_001383465.2
        SwissProt UniProtAcc Q20647
        TREEFAM TREEFAM_ID TF314116
        UniProt_GCRP UniProtAcc Q20647
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (15)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl25 using blastP
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog (27)
    Paralog: WBGene00004438 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Concise_description: rpl-25.2 encodes a large ribosomal subunit L23a protein. Curator_confirmed: WBPerson567
          Date_last_updated: 06 Aug 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL23A (ribosomal protein L23a). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F52B5.6
    Corresponding_transcript: F52B5.6.1
      F52B5.6.2
      F52B5.6.3
      F52B5.6.4
    Other_sequence: BM517336.1
      FE918867.1
      FE916433.1
      FE909415.1
      CBC01325_1
      FE914970.1
      AYC00390_1
      NAC01855_1
      FE913336.1
      TCC02067_1
      CGC00216_1
      FE912883.1
      Acan_isotig06950
      MHC12214_1
      JI472246.1
      HC01956
      FE915971.1
      JI461161.1
      GO248960.1
      FE912324.1
      TLC00033_1
      Name_isotig03676
      FE908439.1
      HC02044
      MJC04647_1
      HGC06533_1
      AS07060
      FE914124.1
      HC02217
      AS02378
      ACC00260_1
      Tcol_isotig12997
      JI181309.1
      BU087869.1
      TDC00081_1
      Acan_isotig05188
      HC02333
      BU086755.1
      AS03541
      Oden_isotig29589
      JI215210.1
      BM517402.1
      Acan_isotig05189
      ACC00363_1
      CB036449.1
      PT00396
      FE919639.1
      MJ05159
      TX01739
      Tcir_isotig25333
      HG06288
      XIC00899_1
      Tcir_isotig29048
      PTC03942_1
      BU666297.1
      HCC00210_1
      HC02479
      Name_isotig03450
      AS10680
      PPC01356_1
      ES880429.1
      HC07448
      FE911280.1
      AS15482
      CB043578.1
      Acan_isotig06949
      CB043715.1
      AS03183
      ASC15965_1
      CR01845
      DA00228
      EX914854.1
      NB07328
      FE919320.1
      EX013744.1
      OOC03112_1
      XI02294
      AS00560
      HC02314
      GRC05106_1
      ACC02617_1
      BU666601.1
      FE915164.1
      AE02222
      JI220218.1
      ASC00337_1
      FD516473.1
      AS16606
      AE00754
      ASC13657_1
      CBC16253_1
      DAC00666_1
      HC07891
      Name_isotig06620
      GR18490
      FE919110.1
      BU087695.1
      Tcol_isotig20773
      Acan_isotig14596
      AS03343
      XI01926
      ASC21975_1
      EX915227.1
      BG467653.1
      CRC11550_1
      FE910286.1
      XI00779
      CSC01596_1
      Tcol_isotig13407
      HCC06373_1
      Tcir_isotig05780
      HC00597
      JO475143.1
      JI215380.1
      HCC09141_1
      FC544234.1
      FE906140.1
      RS05908
      NAC00418_1
    Associated_feature: WBsf649383
      WBsf655290
      WBsf663815
      WBsf984407
      WBsf984408
      WBsf219904
  Experimental_info: RNAi_result (17)
    Expr_pattern: Expr1025098
      Expr1032243
      Expr1151753
      Expr2015456
      Expr2033691
    Drives_construct: WBCnstr00035485
    Construct_product: WBCnstr00035485
    Antibody: WBAntibody00002469
      WBAntibody00002841
    Microarray_results (26)
    Expression_cluster (155)
    Interaction (272)
  Map_info: Map: I Position: 2.74086 Error: 0.002136
    Positive: Positive_clone: F52B5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004402
    WBPaper00024924
    WBPaper00026593
    WBPaper00028381
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00062604
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene