WormBase Tree Display for Gene: WBGene00003773
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| WBGene00003773 | SMap | S_parent | Sequence | ZK892 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nlt-1 | Person_evidence | WBPerson247 | |||||
| Sequence_name | ZK892.2 | ||||||||
| Molecular_name | ZK892.2 | ||||||||
| ZK892.2.1 | |||||||||
| CE01725 | |||||||||
| Other_name | CELE_ZK892.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nlt-1 | ||||||||
| DB_info | Database | AceView | gene | 2K290 | |||||
| WormQTL | gene | WBGene00003773 | |||||||
| WormFlux | gene | WBGene00003773 | |||||||
| NDB | locus_tag | CELE_ZK892.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003773|UniProtKB=Q23655 | |||||||
| family | PTHR10094 | ||||||||
| NCBI | gene | 191734 | |||||||
| RefSeq | protein | NM_063760.6 | |||||||
| SwissProt | UniProtAcc | Q23655 | |||||||
| TREEFAM | TREEFAM_ID | TF343860 | |||||||
| UniProt_GCRP | UniProtAcc | Q23655 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nlt | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00032126 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00079239 | ||||||||
| 00079240 | |||||||||
| Ortholog (30) | |||||||||
| Structured_description | Concise_description | nlt-1 encodes a member of the SCP-2 sterol transfer family. | Paper_evidence | WBPaper00019488 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable lipid binding activity. Predicted to be located in cytosol. Is an ortholog of human SCP2D1 (SCP2 sterol binding domain containing 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK892.2 | |||||||
| Corresponding_transcript | ZK892.2.1 | ||||||||
| Other_sequence | GR367728.1 | ||||||||
| FG974894.1 | |||||||||
| EX916073.1 | |||||||||
| FD517598.1 | |||||||||
| ES414013.1 | |||||||||
| SS00258 | |||||||||
| CBC02224_1 | |||||||||
| Tcir_isotig05067 | |||||||||
| Tcir_isotig02332 | |||||||||
| NBC06158_1 | |||||||||
| CJC00150_1 | |||||||||
| CRC06764_1 | |||||||||
| Name_isotig01353 | |||||||||
| Acan_isotig22238 | |||||||||
| NAC01189_1 | |||||||||
| EX012738.1 | |||||||||
| Tcir_isotig13352 | |||||||||
| FC550085.1 | |||||||||
| DA00035 | |||||||||
| Name_isotig05013 | |||||||||
| BU088364.1 | |||||||||
| CSC02305_1 | |||||||||
| FG977206.1 | |||||||||
| CBC02224_2 | |||||||||
| Name_isotig06282 | |||||||||
| ES409106.1 | |||||||||
| DAC02310_1 | |||||||||
| ES414293.1 | |||||||||
| FK807749.1 | |||||||||
| FK670243.1 | |||||||||
| EX007690.1 | |||||||||
| CJC11208_1 | |||||||||
| Tcir_isotig02331 | |||||||||
| Tcir_isotig05068 | |||||||||
| NB09822 | |||||||||
| ES742404.1 | |||||||||
| FK807412.1 | |||||||||
| GW410912.1 | |||||||||
| SSC00305_1 | |||||||||
| BU666736.1 | |||||||||
| ACC03793_1 | |||||||||
| EX011184.1 | |||||||||
| Associated_feature | WBsf650474 | ||||||||
| WBsf650475 | |||||||||
| WBsf989205 | |||||||||
| WBsf223739 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00092608 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00059799 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038485 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022211 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017319 | ||||||||
| Expr1031763 | |||||||||
| Expr1163231 | |||||||||
| Expr2014328 | |||||||||
| Expr2032569 | |||||||||
| Drives_construct | WBCnstr00035875 | ||||||||
| Construct_product | WBCnstr00035875 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (176) | |||||||||
| Interaction | WBInteraction000347201 | ||||||||
| WBInteraction000457050 | |||||||||
| WBInteraction000520267 | |||||||||
| WBInteraction000549914 | |||||||||
| WBInteraction000549919 | |||||||||
| WBInteraction000572441 | |||||||||
| WBInteraction000577650 | |||||||||
| WBInteraction000580201 | |||||||||
| Map_info | Map | II | Position | 1.82053 | Error | 0.000887 | |||
| Positive | Positive_clone | ZK892 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4537 | |||||||
| 5053 | |||||||||
| 5451 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00019488 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
