WormBase Tree Display for Gene: WBGene00002850
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WBGene00002850 | SMap | S_parent | Sequence | C16A3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | let-716 | Person_evidence | WBPerson533 | |||||
Sequence_name | C16A3.3 | ||||||||
Molecular_name | C16A3.3 | ||||||||
C16A3.3.1 | |||||||||
CE27690 | |||||||||
Other_name | CELE_C16A3.3 | Accession_evidence | NDB | BX284603 | |||||
Public_name | let-716 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00002850 | |||||
WormFlux | gene | WBGene00002850 | |||||||
NDB | locus_tag | CELE_C16A3.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00002850|UniProtKB=Q18038 | |||||||
family | PTHR23270 | ||||||||
NCBI | gene | 175906 | |||||||
RefSeq | protein | NM_065997.5 | |||||||
TREEFAM | TREEFAM_ID | TF105697 | |||||||
TrEMBL | UniProtAcc | Q18038 | |||||||
UniProt_GCRP | UniProtAcc | Q18038 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:29 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 30 Jan 2008 10:06:04 | WBPerson2970 | Event | Acquires_merge | WBGene00015808 | ||||
Name_change | Sequence_name | C16A3.3 | |||||||
Acquires_merge | WBGene00015808 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | let | ||||||||
Allele (64) | |||||||||
Legacy_information | [Stewart HI] homozygotes arrest at early larval stage | ||||||||
[C.elegansII] s2457 : early larval lethal. OA1: s2626 (similar). [BC] | |||||||||
Strain | WBStrain00000771 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00060046 | ||||||||
00060047 | |||||||||
00060048 | |||||||||
00060049 | |||||||||
00060050 | |||||||||
00110407 | |||||||||
00110408 | |||||||||
00110409 | |||||||||
Contained_in_operon | CEOP3368 | ||||||||
Ortholog (39) | |||||||||
Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Is an ortholog of human PDCD11 (programmed cell death 11). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C16A3.3 | |||||||
Corresponding_transcript | C16A3.3.1 | ||||||||
Other_sequence | Tcol_isotig16954 | ||||||||
BU666188.1 | |||||||||
JI170983.1 | |||||||||
Acan_isotig07515 | |||||||||
Tcir_isotig06480 | |||||||||
PTC02877_1 | |||||||||
Acan_isotig17402 | |||||||||
HBC20004_1 | |||||||||
SS02606 | |||||||||
Oden_isotig10317 | |||||||||
FG348269.1 | |||||||||
JI171870.1 | |||||||||
NAC00895_1 | |||||||||
JI215638.1 | |||||||||
SSC04387_1 | |||||||||
CR04287 | |||||||||
Acan_isotig13712 | |||||||||
PSC02876_1 | |||||||||
PT03579 | |||||||||
Dviv_isotig23218 | |||||||||
Tcol_isotig21072 | |||||||||
Hbac_isotig05675 | |||||||||
Oden_isotig10316 | |||||||||
Oden_isotig10319 | |||||||||
GW408887.1 | |||||||||
JI164143.1 | |||||||||
ES413688.1 | |||||||||
CJC14241_1 | |||||||||
Name_isotig03763 | |||||||||
Oden_isotig21664 | |||||||||
Oden_isotig10315 | |||||||||
PP01785 | |||||||||
Oden_isotig10318 | |||||||||
Hbac_isotig05066 | |||||||||
CRC02191_1 | |||||||||
Associated_feature | WBsf659070 | ||||||||
WBsf225096 | |||||||||
Experimental_info | RNAi_result (24) | ||||||||
Expr_pattern | Expr1013064 | ||||||||
Expr1031366 | |||||||||
Expr1144708 | |||||||||
Expr2013072 | |||||||||
Expr2031304 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (121) | |||||||||
SAGE_tag (21) | |||||||||
Interaction (353) | |||||||||
Map_info | Map | III | Position | -1.31646 | Error | 0.00703 | |||
Well_ordered | |||||||||
Positive (2) | |||||||||
Mapping_data | Multi_point | 3328 | |||||||
Pos_neg_data | 8680 | ||||||||
8695 | |||||||||
8708 | |||||||||
8711 | |||||||||
8753 | |||||||||
8770 | |||||||||
9198 | |||||||||
Reference | WBPaper00002901 | ||||||||
WBPaper00003304 | |||||||||
WBPaper00015389 | |||||||||
WBPaper00023496 | |||||||||
WBPaper00028451 | |||||||||
WBPaper00031176 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Rescue for s2457 was to fertile adult and for s2626 to sterile adult from early larval arrest stages. | ||||||||
Method | Gene |