WormBase Tree Display for Gene: WBGene00001972
expand all nodes | collapse all nodes | view schema
| WBGene00001972 | SMap | S_parent | Sequence | F47D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hmg-1.2 | |||||||
| Sequence_name | F47D12.4 | ||||||||
| Molecular_name | F47D12.4a | ||||||||
| F47D12.4a.1 | |||||||||
| CE26923 | |||||||||
| F47D12.4b | |||||||||
| CE28233 | |||||||||
| F47D12.4c | |||||||||
| CE28234 | |||||||||
| F47D12.4b.1 | |||||||||
| F47D12.4c.1 | |||||||||
| Other_name | son-1 | CGC_data_submission | |||||||
| CELE_F47D12.4 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | hmg-1.2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hmg | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00001623 | ||||||||
| WBStrain00030872 | |||||||||
| WBStrain00030873 | |||||||||
| WBStrain00030879 | |||||||||
| WBStrain00036586 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (61) | |||||||||
| Paralog | WBGene00001973 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00001974 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008081 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012209 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022182 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enables transcription cis-regulatory region binding activity. Involved in several processes, including gonad development; positive regulation of transcription by RNA polymerase II; and vulval development. Located in nucleus. Expressed in several structures, including tail. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; cerebral infarction; and syndromic microphthalmia 13. Is an ortholog of human HMGB3 (high mobility group box 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:6000 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||
| DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
| DOID:0111811 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5004) | ||||||
| DOID:3526 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
| DOID:13378 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
| DOID:418 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
| Molecular_info | Corresponding_CDS | F47D12.4a | |||||||
| F47D12.4b | |||||||||
| F47D12.4c | |||||||||
| Corresponding_transcript | F47D12.4a.1 | ||||||||
| F47D12.4b.1 | |||||||||
| F47D12.4c.1 | |||||||||
| Other_sequence | EY466700.1 | ||||||||
| HCC12429_1 | |||||||||
| EX501487.1 | |||||||||
| SR00694 | |||||||||
| AW506020.1 | |||||||||
| Oden_isotig19842 | |||||||||
| CRC09188_1 | |||||||||
| TSC00220_1 | |||||||||
| GW406225.1 | |||||||||
| AYC01336_1 | |||||||||
| AYC02469_1 | |||||||||
| HC09698 | |||||||||
| GPC03284_1 | |||||||||
| HG00339 | |||||||||
| MHC00524_1 | |||||||||
| AE02104 | |||||||||
| Tcol_isotig09026 | |||||||||
| MH08152 | |||||||||
| FG348827.1 | |||||||||
| MJ03861 | |||||||||
| ACC00162_1 | |||||||||
| FG348202.1 | |||||||||
| BUC02108_1 | |||||||||
| EY460209.1 | |||||||||
| HGC04942_1 | |||||||||
| EX007612.1 | |||||||||
| TSC01688_1 | |||||||||
| PSC01899_2 | |||||||||
| ACC34907_1 | |||||||||
| AE01449 | |||||||||
| Acan_isotig04330 | |||||||||
| HBC03560_1 | |||||||||
| FG351142.1 | |||||||||
| FC820902.1 | |||||||||
| XI04366 | |||||||||
| EY471370.1 | |||||||||
| TS01437 | |||||||||
| CR00141 | |||||||||
| GRC00273_1 | |||||||||
| FC818417.1 | |||||||||
| JI476491.1 | |||||||||
| SS01022 | |||||||||
| GW411071.1 | |||||||||
| JI473295.1 | |||||||||
| FC821531.1 | |||||||||
| EX546374.1 | |||||||||
| Dviv_isotig09289 | |||||||||
| DAC00319_1 | |||||||||
| AE00964 | |||||||||
| EY465200.1 | |||||||||
| PSC00979_1 | |||||||||
| SRC00138_1 | |||||||||
| CRC01881_1 | |||||||||
| MA01069 | |||||||||
| Dviv_isotig09291 | |||||||||
| Name_isotig01434 | |||||||||
| DA02154 | |||||||||
| Dviv_isotig09284 | |||||||||
| FG580589.1 | |||||||||
| AE00546 | |||||||||
| Tcol_isotig09025 | |||||||||
| TS02702 | |||||||||
| TSC00148_1 | |||||||||
| FG619458.1 | |||||||||
| EX558230.1 | |||||||||
| XIC04845_1 | |||||||||
| CR09560 | |||||||||
| TS01436 | |||||||||
| ACC25272_1 | |||||||||
| MHC04897_1 | |||||||||
| MH08398 | |||||||||
| MH01771 | |||||||||
| BXC06339_1 | |||||||||
| ES570043.1 | |||||||||
| GP02193 | |||||||||
| JI181985.1 | |||||||||
| XI00524 | |||||||||
| Dviv_isotig09286 | |||||||||
| MI02039 | |||||||||
| EY461367.1 | |||||||||
| CR05313 | |||||||||
| CR02451 | |||||||||
| SSC00682_1 | |||||||||
| Dviv_isotig09287 | |||||||||
| JI178045.1 | |||||||||
| MI05574 | |||||||||
| FC812635.1 | |||||||||
| TS00988 | |||||||||
| EX015045.1 | |||||||||
| DA02153 | |||||||||
| EY466111.1 | |||||||||
| AYC02392_1 | |||||||||
| Dviv_isotig09290 | |||||||||
| XIC04556_1 | |||||||||
| EY467756.1 | |||||||||
| XIC01477_1 | |||||||||
| CRC06951_1 | |||||||||
| CR00541 | |||||||||
| EX913026.1 | |||||||||
| EX545966.1 | |||||||||
| ES563158.1 | |||||||||
| PPC03690_1 | |||||||||
| ES569304.1 | |||||||||
| Tcir_isotig05318 | |||||||||
| AYC02392_2 | |||||||||
| MAC02035_1 | |||||||||
| MIC03281_1 | |||||||||
| Hbac_isotig04106 | |||||||||
| EX560143.1 | |||||||||
| MJC02967_1 | |||||||||
| EY471073.1 | |||||||||
| Dviv_isotig09288 | |||||||||
| Dviv_isotig09285 | |||||||||
| GW410342.1 | |||||||||
| XI04346 | |||||||||
| FC818286.1 | |||||||||
| TS03027 | |||||||||
| Associated_feature (13) | |||||||||
| Transcription_factor | WBTranscriptionFactor000385 | ||||||||
| Experimental_info (8) | |||||||||
| Map_info | Map | III | Position | -1.40577 | Error | 0.000741 | |||
| Positive | Positive_clone | F47D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4334 | |||||||
| 4407 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
