WormBase Tree Display for Gene: WBGene00001620
expand all nodes | collapse all nodes | view schema
WBGene00001620 | SMap | S_parent | Sequence | C12D12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | glt-1 | |||||||
Sequence_name | C12D12.2 | ||||||||
Molecular_name | C12D12.2a | ||||||||
C12D12.2a.1 | |||||||||
CE29083 | |||||||||
C12D12.2b | |||||||||
CE29084 | |||||||||
C12D12.2b.1 | |||||||||
Other_name | Ceglut-2 | Accession_evidence | EMBL | D86740 | |||||
CeGlt-2 | Accession_evidence | EMBL | U35250 | ||||||
CeGlt-1 | CGC_data_submission | ||||||||
glt-2 | CGC_data_submission | ||||||||
CELE_C12D12.2 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | glt-1 | ||||||||
DB_info | Database | AceView | gene | XE117 | |||||
WormQTL | gene | WBGene00001620 | |||||||
WormFlux | gene | WBGene00001620 | |||||||
NDB | locus_tag | CELE_C12D12.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001620|UniProtKB=Q10901 | |||||||
family | PTHR11958 | ||||||||
NCBI | gene | 180641 | |||||||
RefSeq | protein | NM_001029223.6 | |||||||
NM_001029222.4 | |||||||||
SwissProt | UniProtAcc | Q10901 | |||||||
UniProt_GCRP | UniProtAcc | Q10901 | |||||||
OMIM | gene | 600300 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info (9) | |||||||||
Disease_info | Potential_model | DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10940) | ||||
DOID:12858 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10940) | ||||||
DOID:0080442 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10940) | ||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00010636 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027701 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00040376 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr4787 | ||||||||
Expr14560 | |||||||||
Expr1012956 | |||||||||
Expr1030972 | |||||||||
Expr1144438 | |||||||||
Expr2012126 | |||||||||
Expr2030362 | |||||||||
Drives_construct | WBCnstr00008084 | ||||||||
WBCnstr00012244 | |||||||||
WBCnstr00036819 | |||||||||
WBCnstr00040757 | |||||||||
Construct_product | WBCnstr00012244 | ||||||||
WBCnstr00036819 | |||||||||
Antibody | WBAntibody00001533 | ||||||||
WBAntibody00001534 | |||||||||
WBAntibody00002630 | |||||||||
Microarray_results (26) | |||||||||
Expression_cluster (191) | |||||||||
Interaction (15) | |||||||||
Map_info | Map | X | Position | -10.2673 | Error | 0.012682 | |||
Positive | Positive_clone | B0015 | |||||||
C12D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4357 | |||||||
4758 | |||||||||
Reference (14) | |||||||||
Remark | [Radice A] identified a putative glutamate transporter by hybridization to YAC polytene filters and subsequently sequenced the complete gene from the cosmid B0015. The gene 2.9 kb, contains nine exons and is located on the left arm of the X between vit-4 and vit-5. | ||||||||
This gene is very likely the same gene as glt-1 (an uncloned locus). glt-1 is known to be in clone B0015, an unsequenced clone which heavily overlaps C12D12 (the clone containing this gene). No other likely glutatmate transporters are in this region of the chromosome (as revealed from a TBLASTN search of glt-2 protein sequence) so there may only be one true glt-* gene and the different gene names (glt-1, glt-2, Ceglut-1,Ceglut-2, CeGlt-1, and CeGlt-2) are just referring to the two isoforms of this gene [krb 031029] | Accession_evidence | EMBL | D86740 | ||||||
D86741 | |||||||||
U35250 | |||||||||
Method | Gene |