WormBase Tree Display for Gene: WBGene00000664

WBGene00000664 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F17C8
  Identity: Version: 1
    Name: CGC_name: col-89 Person_evidence: WBPerson345
      Sequence_name: F17C8.2
      Molecular_name: F17C8.2
        F17C8.2.1
        CE00956
      Other_name: CELE_F17C8.2 Accession_evidence: NDB BX284603
      Public_name: col-89
    DB_info: Database: AceView gene 3F837
        WormQTL gene WBGene00000664
        WormFlux gene WBGene00000664
        NDB locus_tag CELE_F17C8.2
        Panther gene CAEEL|WormBase=WBGene00000664|UniProtKB=Q19528
          family PTHR24637
        NCBI gene 175627
        RefSeq protein NM_065574.4
        TREEFAM TREEFAM_ID TF316783
        TrEMBL UniProtAcc Q19528
        UniProt_GCRP UniProtAcc Q19528
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (18)
    Strain: WBStrain00002199
      WBStrain00002200
      WBStrain00002326
    RNASeq_FPKM (74)
    GO_annotation: 00065006
      00065007
      00105685
      00107659
    Ortholog (29)
    Paralog (39)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Involved in IRE1-mediated unfolded protein response. Predicted to be part of collagen trimer. Expressed in head; neurons; and tail. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F17C8.2
    Corresponding_transcript: F17C8.2.1
    Other_sequence: HG07814
      FK806050.1
      EX547872.1
      BG485913.1
      BF482171.1
      CK850500.1
      R84214.1
      CK850075.1
      EX557546.1
      JI246039.1
      EX542697.1
      FG973360.1
      ACC10328_1
      Tcol_isotig13298
      FE914840.1
      JI172092.1
      CB038411.1
      FG979649.1
      FG972575.1
      Dviv_isotig25926
      CK725917.1
      CK850606.1
      DN190678.1
      DN191290.1
      ASC06293_1
      CB038340.1
      JI245251.1
      EX546546.1
      CB036421.1
      CB036507.1
      JI463518.1
      BMC00068_1
      EX546502.1
      AA701702.1
      TCC01070_1
      CB036387.1
      BF942751.1
      TCC02563_1
      EX549827.1
      EX535880.1
      BG310531.1
      SR02495
      EX542624.1
      CB037781.1
      EX538699.1
      AI053005.1
      BF599226.1
      CB038576.1
      BE720900.1
      JI213063.1
      PT00146
      MHC01378_1
      EX538441.1
      HBC14076_1
      JI461483.1
      JI464881.1
      HC00574
      JI461984.1
      JI175188.1
      R84215.1
      BG734414.1
      AW308640.1
      HCC02220_1
      AI130261.1
      AI045991.1
      CB036369.1
      CB036535.1
      CB038521.1
      EX536320.1
      Tcol_isotig19188
      AAC00483_1
      EX548363.1
      CB036441.1
      BE669147.1
      AA675929.1
      ASC04520_1
      BF400349.1
      AW208346.1
      CB036203.1
      Tcir_isotig23521
      AS10164
      CK850358.1
      MH02474
      CK850257.1
      EX538243.1
      BG734427.1
      AA611001.1
      HC03064
      AI132880.1
      CB038610.1
      AW980179.1
      CK725837.1
      GO240032.1
      ALC00652_1
      CB039194.1
      EX541830.1
      AW288258.1
      AW257608.1
      TDC00439_1
      AA670522.1
      FE915203.1
      PTC00601_1
      DN190893.1
      WBC01798_1
      NBC00403_1
      CB038771.1
      Oden_isotig20110
      MC05684
      CK850825.1
      BF400505.1
      AS10563
      EX536704.1
      CB038974.1
      BF400421.1
      AW980266.1
      MCC00285_1
      TX00065
      EX548680.1
      CK725635.1
      JI214004.1
      AW980196.1
      AA756860.1
      CB037055.1
      DN191339.1
      Oden_isotig20384
      BF400523.1
      JO470724.1
      CB038307.1
      EX541754.1
      CK726187.1
      AS10324
      JI481972.1
      AI444882.1
      AW980134.1
      OVC08274_1
      BF482033.1
      AA629468.1
      FG970874.1
      TX00343
      JI179780.1
      R88410.1
      AA618776.1
      BF482114.1
      EX540222.1
      CK854776.1
      ACC15246_1
      HG08131
      ASC00109_1
      JO467696.1
      OVC04164_1
      HGC12362_1
      CB037404.1
      OVC03989_1
      JI177367.1
      MAC00704_1
      AA917244.1
      FE912375.1
      FK803994.1
      FC811667.1
      AS08397
      ASC00096_1
      FG973180.1
      BE420521.1
      CB036674.1
      AA701726.1
      DN191123.1
      CB038720.1
      DN557561.1
      NB08017
      OVC03987_1
      AS10245
      Oden_isotig21863
      AI317898.1
      CK855230.1
      HG07878
      BE636488.1
      AA670508.1
      EX539069.1
      HG05507
      EX549374.1
      CB037198.1
      TDC00439_2
      JI216649.1
      MC01617
      CK850523.1
      BU586918.1
      OVC04211_1
      HCC00219_1
      BE491767.1
      CB036848.1
      HCC11459_1
      EX541219.1
      AI317941.1
      DN191322.1
      EX557034.1
      EX543143.1
      BMC15301_1
      AS10282
      CB037158.1
      EX537946.1
      ASC04231_1
      WBC01410_1
      OVC03985_1
      OVC03791_1
      BMC12467_1
      AA618898.1
      AA629443.1
      HC01152
      EX550886.1
      AA680442.1
      BU586933.1
      BG734400.1
      OVC06825_1
      EX548682.1
      CB038981.1
      CB036215.1
      AW409506.1
      JI174214.1
      AI317884.1
      BE346031.1
      CB038994.1
      OVC00036_1
      JO474157.1
      WBC01702_1
      EX540752.1
      OVC09155_1
      CB037254.1
      AW980229.1
      AS03641
      EX543549.1
      CJC06872_1
      AW208322.1
      GT570977.1
      TDC00439_3
      BF482037.1
      AW980272.1
      AI603812.1
      AA668050.1
      JI172781.1
      EX536403.1
      ASC24675_1
      OVC03986_1
      AAC00317_1
      CK850553.1
      JI219708.1
      CB036956.1
      DN191247.1
      DN190757.1
      CK850439.1
      AA294734.1
      AA618896.1
      AW257587.1
      BF482061.1
      EX539527.1
      MCC05984_1
      JI231202.1
      CK850608.1
      ACC05614_1
      CK726344.1
      CB036223.1
      FE916789.1
      JI174685.1
      HC03888
      AW257592.1
      AA934315.1
      CB037848.1
      HG07796
      BF918220.1
      AA635229.1
      ES408898.1
      HC00508
      BF599156.1
      LSC00698_1
    Associated_feature (4)
  Experimental_info: RNAi_result: WBRNAi00005077 Inferred_automatically: RNAi_primary
      WBRNAi00013464 Inferred_automatically: RNAi_primary
      WBRNAi00044883 Inferred_automatically: RNAi_primary
      WBRNAi00031072 Inferred_automatically: RNAi_primary
      WBRNAi00006864 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram335
      Chronogram1774
      Expr5782
      Expr5783
      Expr12109
      Expr1019190
      Expr1030391
      Expr1148849
      Expr2010435
      Expr2028675
    Drives_construct: WBCnstr00002942
      WBCnstr00002943
      WBCnstr00004466
      WBCnstr00037387
    Construct_product: WBCnstr00037387
    Microarray_results (18)
    Expression_cluster (234)
    Interaction (21)
  Map_info: Map: III Position: -2.60226 Error: 0.00352
    Positive: Positive_clone: F17C8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene