WormBase Tree Display for Gene: WBGene00000183
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| WBGene00000183 | SMap | S_parent | Sequence | F57H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | arf-5 | Laboratory_evidence | GNW | |||||
| Sequence_name | F57H12.1 | ||||||||
| Molecular_name | F57H12.1 | ||||||||
| F57H12.1.1 | |||||||||
| CE17122 | |||||||||
| Other_name | arf-3 | ||||||||
| CELE_F57H12.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | arf-5 | ||||||||
| DB_info | Database | AceView | gene | 4I747 | |||||
| WormQTL | gene | WBGene00000183 | |||||||
| WormFlux | gene | WBGene00000183 | |||||||
| NDB | locus_tag | CELE_F57H12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000183|UniProtKB=G5EFK4 | |||||||
| family | PTHR11711 | ||||||||
| NCBI | gene | 177595 | |||||||
| RefSeq | protein | NM_068935.7 | |||||||
| TrEMBL | UniProtAcc | G5EFK4 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFK4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 10 Sep 2020 13:44:47 | WBPerson1983 | Name_change | CGC_name | arf-5 | ||||
| Other_name | arf-3 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | arf | ||||||||
| Allele (27) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted class II ARF. [MQ] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (42) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Concise_description | arf-3 encodes a member of the ADP-ribosylation factor related protein family; likely expressed in touch receptors and regulated by MEC-3. | Paper_evidence | WBPaper00005356 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable GTP binding activity and GTPase activity. Involved in embryo development and germ cell development. Predicted to be located in plasma membrane. Expressed in several structures, including body wall musculature; intestine; pharyngeal muscle cell; ventral nerve cord; and vulva. Is an ortholog of human ARF5 (ADP ribosylation factor 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57H12.1 | |||||||
| Corresponding_transcript | F57H12.1.1 | ||||||||
| Other_sequence | Name_isotig00207 | ||||||||
| AE02901 | |||||||||
| ASC09646_1 | |||||||||
| JI226618.1 | |||||||||
| Name_isotig00208 | |||||||||
| BMC02431_1 | |||||||||
| CR06146 | |||||||||
| GP00303 | |||||||||
| PPC11236_1 | |||||||||
| XI02658 | |||||||||
| Tcir_isotig20228 | |||||||||
| AS13821 | |||||||||
| JI219558.1 | |||||||||
| AYC04583_1 | |||||||||
| Dviv_isotig19176 | |||||||||
| XIC03337_1 | |||||||||
| BUC02241_1 | |||||||||
| SS03467 | |||||||||
| ASC21662_1 | |||||||||
| JI226626.1 | |||||||||
| JI226632.1 | |||||||||
| DA04536 | |||||||||
| EX011957.1 | |||||||||
| JI214631.1 | |||||||||
| ES570039.1 | |||||||||
| BXC03530_1 | |||||||||
| JO474867.1 | |||||||||
| AE02815 | |||||||||
| HBC08489_1 | |||||||||
| TS02826 | |||||||||
| PPC04246_1 | |||||||||
| JI226664.1 | |||||||||
| ASC10139_1 | |||||||||
| JI216431.1 | |||||||||
| CRC10525_1 | |||||||||
| FE916372.1 | |||||||||
| EX915097.1 | |||||||||
| FD514794.1 | |||||||||
| ASC10095_1 | |||||||||
| TSC13325_1 | |||||||||
| FE915818.1 | |||||||||
| MJC00020_1 | |||||||||
| JI216434.1 | |||||||||
| AE02136 | |||||||||
| GRC05066_1 | |||||||||
| AS12253 | |||||||||
| GPC00450_1 | |||||||||
| MA01641 | |||||||||
| JI216450.1 | |||||||||
| AS16884 | |||||||||
| JI226607.1 | |||||||||
| CJC15833_1 | |||||||||
| EX915575.1 | |||||||||
| MJ01425 | |||||||||
| ES567823.1 | |||||||||
| MAC00946_1 | |||||||||
| DAC02600_1 | |||||||||
| AE02266 | |||||||||
| ES565033.1 | |||||||||
| JO474480.1 | |||||||||
| Tcir_isotig13013 | |||||||||
| FF680169.1 | |||||||||
| PPC15050_1 | |||||||||
| JI216469.1 | |||||||||
| ES740322.1 | |||||||||
| JI253140.1 | |||||||||
| JI211666.1 | |||||||||
| JI226652.1 | |||||||||
| ES412527.1 | |||||||||
| Dviv_isotig19175 | |||||||||
| TS01607 | |||||||||
| GR18060 | |||||||||
| JI226659.1 | |||||||||
| FG620134.1 | |||||||||
| Associated_feature | WBsf655001 | ||||||||
| WBsf660342 | |||||||||
| WBsf660343 | |||||||||
| WBsf228608 | |||||||||
| WBsf228609 | |||||||||
| WBsf228610 | |||||||||
| WBsf228611 | |||||||||
| WBsf228612 | |||||||||
| Experimental_info | RNAi_result (40) | ||||||||
| Expr_pattern | Expr3150 | ||||||||
| Expr7309 | |||||||||
| Expr1024035 | |||||||||
| Expr1030107 | |||||||||
| Expr1152651 | |||||||||
| Expr2009392 | |||||||||
| Expr2027628 | |||||||||
| Drives_construct | WBCnstr00001919 | ||||||||
| WBCnstr00005028 | |||||||||
| WBCnstr00005042 | |||||||||
| WBCnstr00011178 | |||||||||
| WBCnstr00012518 | |||||||||
| WBCnstr00037679 | |||||||||
| Construct_product (3) | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (112) | |||||||||
| Map_info | Map | IV | Position | 3.5421 | Error | 0.011401 | |||
| Positive | Positive_clone | F57H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5228 | |||||||
| Pseudo_map_position | |||||||||
| Reference (21) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
