WormBase Tree Display for Gene: WBGene00013168
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| WBGene00013168 | SMap | S_parent | Sequence | Y53F4B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | arp-1 | Person_evidence | WBPerson1562 | |||||
| Sequence_name | Y53F4B.22 | ||||||||
| Molecular_name | Y53F4B.22a | ||||||||
| Y53F4B.22a.1 | |||||||||
| CE35675 | |||||||||
| Y53F4B.22b | |||||||||
| CE48840 | |||||||||
| Y53F4B.22b.1 | |||||||||
| Other_name | CELE_Y53F4B.22 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | arp-1 | ||||||||
| DB_info | Database | AceView | gene | 2P407 | |||||
| WormQTL | gene | WBGene00013168 | |||||||
| SignaLink | protein | WBGene00013168 | |||||||
| WormFlux | gene | WBGene00013168 | |||||||
| NDB | locus_tag | CELE_Y53F4B.22 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013168|UniProtKB=Q9NA98 | |||||||
| family | PTHR11937 | ||||||||
| NCBI | gene | 175162 | |||||||
| RefSeq | protein | NM_064707.7 | |||||||
| NM_001306622.3 | |||||||||
| TrEMBL | UniProtAcc | Q9NA98 | |||||||
| U4PR70 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9NA98 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 14 Nov 2008 16:27:48 | WBPerson2970 | Event | Acquires_merge | WBGene00000194 | ||||
| Acquires_merge | WBGene00000194 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | arp | ||||||||
| Allele (56) | |||||||||
| Legacy_information | [C.elegansII] NMK. Sequence predicts protein with 50% homology to actin, 67% to vertebrate actin related protein. Antibody staining suggests located at cell division remnant. [RW] | ||||||||
| Strain | WBStrain00040378 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095869 | ||||||||
| Ortholog (36) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Automated_description | Part of dynactin complex. Human ortholog(s) of this gene implicated in Down syndrome and colon cancer. Is an ortholog of human ACTR1A (actin related protein 1A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:219 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:167) | ||||
| DOID:14250 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:167) | ||||||
| Molecular_info | Corresponding_CDS | Y53F4B.22a | |||||||
| Y53F4B.22b | |||||||||
| Corresponding_CDS_history | Y53F4B.22:wp109 | ||||||||
| Corresponding_transcript | Y53F4B.22a.1 | ||||||||
| Y53F4B.22b.1 | |||||||||
| Other_sequence | TS03187 | ||||||||
| FK800707.1 | |||||||||
| PTC02100_1 | |||||||||
| TSC06179_1 | |||||||||
| EY467964.1 | |||||||||
| TSC02049_1 | |||||||||
| Acan_isotig05941 | |||||||||
| Hbac_isotig01864 | |||||||||
| EX554510.1 | |||||||||
| TMC01543_1 | |||||||||
| CJC06408_1 | |||||||||
| FC814799.1 | |||||||||
| Tcol_isotig09916 | |||||||||
| FC816327.1 | |||||||||
| HG07687 | |||||||||
| EX563629.1 | |||||||||
| Acan_isotig05940 | |||||||||
| GRC00536_1 | |||||||||
| CR09353 | |||||||||
| XI03351 | |||||||||
| AYC01819_1 | |||||||||
| CR03190 | |||||||||
| AE03476 | |||||||||
| ES566121.1 | |||||||||
| CRC08360_1 | |||||||||
| Tcol_isotig09917 | |||||||||
| EX551947.1 | |||||||||
| Dviv_isotig23939 | |||||||||
| EX564407.1 | |||||||||
| Tcir_isotig28577 | |||||||||
| EX912487.1 | |||||||||
| CBC05602_1 | |||||||||
| AW506390.1 | |||||||||
| CR09352 | |||||||||
| TS00247 | |||||||||
| TS02446 | |||||||||
| CJC02655_1 | |||||||||
| SRC00312_1 | |||||||||
| PT00247 | |||||||||
| TM01833 | |||||||||
| EX566024.1 | |||||||||
| FC545519.1 | |||||||||
| Oden_contig11771 | |||||||||
| HBC09350_1 | |||||||||
| SR02442 | |||||||||
| ACC05876_1 | |||||||||
| EY468039.1 | |||||||||
| Acan_isotig10850 | |||||||||
| FR694963.1 | |||||||||
| GO251526.1 | |||||||||
| TSC02456_1 | |||||||||
| EW742178.1 | |||||||||
| FK806638.1 | |||||||||
| JI170302.1 | |||||||||
| TSC00206_1 | |||||||||
| EX564123.1 | |||||||||
| EX563916.1 | |||||||||
| XIC02903_1 | |||||||||
| TS01753 | |||||||||
| SR00454 | |||||||||
| Name_isotig01071 | |||||||||
| ACC05742_1 | |||||||||
| Tcir_isotig05075 | |||||||||
| Associated_feature | WBsf644884 | ||||||||
| WBsf990898 | |||||||||
| WBsf990899 | |||||||||
| WBsf990900 | |||||||||
| WBsf1013947 | |||||||||
| WBsf222537 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr8526 | ||||||||
| Expr1023806 | |||||||||
| Expr1035850 | |||||||||
| Expr1160714 | |||||||||
| Expr2009406 | |||||||||
| Expr2027642 | |||||||||
| Construct_product | WBCnstr00001390 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (92) | |||||||||
| Interaction (67) | |||||||||
| Map_info | Map | II | Position | 24.073 | Error | 0.044205 | |||
| Positive | Positive_clone | Y53F4B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012379 | ||||||||
| WBPaper00014851 | |||||||||
| WBPaper00014852 | |||||||||
| WBPaper00015103 | |||||||||
| WBPaper00022051 | |||||||||
| WBPaper00036942 | |||||||||
| WBPaper00037699 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041129 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00052206 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
