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WormBase Tree Display for Gene: WBGene00256930

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Name Class

WBGene00256930SMapS_parentSequenceSRAE_chr1
IdentityVersion1
NameSequence_nameSRAE_1000033500
Molecular_nameSRAE_1000033500
SRAE_1000033500.1
SRP06410
Other_nameSR00094Person_evidenceWBPerson2951
Public_nameSRAE_1000033500
SpeciesStrongyloides ratti
HistoryVersion_change101 May 2015 10:45:53WBPerson4055EventCreated
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:0000677133.278From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
135.268From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
197.017From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
197.811From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
236.355From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
239.863From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
WBls:00006780.691281From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
0.918719From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
1.01169From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
1.12037From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
1.9226From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
2.11003From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
2.11731From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
4.85835From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
WBls:00006801.07088From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:0000682151.278From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
GO_annotation00264766
OrthologWBGene00194317Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00041817Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00230818Brugia malayiFrom_analysisWormBase-Compara
WBGene00005018Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243832Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00052505Caenorhabditis remaneiFrom_analysisWormBase-Compara
CBOVI.g802Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2317Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18911Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7346Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17713Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1461Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g417Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4999Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4942Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17516Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-sqt-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold600.g5390Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02380.g26242Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_018279Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g3336Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5920Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50126800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15985Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (73)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of cuticle. Is an ortholog of C. elegans sqt-3. In C. elegans, sqt-3 is involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSSRAE_1000033500
Corresponding_transcriptSRAE_1000033500.1
Other_sequence (317)
Experimental_infoExpression_clusterWBPaper00050919:down_infective-L3_vs_free-living_mRNA
WBPaper00050919:down_parasitic_vs_free-living_mRNA
MethodGene