WormBase Tree Display for Gene: WBGene00138394

WBGene00138394 SMap: S_parent: Sequence: Cjap.Contig2472
  Identity: Version: 2
    Name: CGC_name: Cjp-nhr-23 From_analysis: Inferred_from_orthology
      Sequence_name: CJA19190
      Molecular_name: CJA19190
        CJA19190.1
        JA50967
      Public_name: Cjp-nhr-23
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-nhr-23
        2 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000004 12.862 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 16.2205 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 8.05055 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        8.3533 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        8.65606 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 25.9448 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        27.7818 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        29.0956 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        32.4669 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        32.7585 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        33.9757 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        35.1928 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        35.2822 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        35.4213 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        38.2584 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
      WBls:0000101 23.5019 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        27.7818 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    GO_annotation: 00201881
      00201882
      00201883
      00201884
    Ortholog: WBGene00003622 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00040598 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00069903 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00142815 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00141710 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00147770 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222157 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10541 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2440 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1733 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13049 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10737 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g101 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15439 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7874 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18353 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19199 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00700.g13539 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-nhr-23 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g9963 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01445.g20967 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_10360 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000213 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_000214 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g9832 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10085800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_10086200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1336 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237273 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00282358 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00261878 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285190 Trichuris muris From_analysis: WormBase-Compara
      WBGene00285991 Trichuris muris From_analysis: WormBase-Compara
    Paralog (105)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-23. In C. elegans, nhr-23 is involved in several processes, including defense response to Gram-negative bacterium; positive regulation of transcription by RNA polymerase II; and spermatogenesis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA19190
    Corresponding_transcript: CJA19190.1
    Other_sequence (18)
  Experimental_info: Expr_pattern: Expr1077325
      Expr1081258
    Microarray_results: GPL14145_CJA19190_418-477_0.731_97_A
      GPL14145_CJA19190_504-563_0.844_39_B
      GPL14145_CJA19190_585-644_0.859_29_C
      GPL14145_CJA21401_388-447_0.907_1_A
  Method: Gene