WormBase Tree Display for Gene: WBGene00110842

WBGene00110842 SMap: S_parent: Sequence: PPA_ChrII
  Identity: Version: 2
    Name: CGC_name: Ppa-lgc-56 From_analysis: Inferred_from_orthology
      Sequence_name: PPA21288
      Molecular_name: PPA21288
        PPA21288.1
        PP54942
      Other_name: GENEPREDICTION_SNAP300000078033
        UMM-S10-53.15 Person_evidence: WBPerson606
        Ppa-ggr-3 From_analysis: Inferred_from_orthology
      Public_name: Ppa-lgc-56
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Ppa-lgc-56
                Other_name: Ppa-ggr-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    RNASeq_FPKM: WBls:0000032 0 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
            RNASeq.pristionchus.total_over_all_stages.control_mean
    GO_annotation: 00182911
      00182912
      00182913
      00182914
      00182915
      00182916
    Ortholog: WBGene00001588 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00025402 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057429 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00152602 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00191332 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00125864 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00207873 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00207991 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00210870 Caenorhabditis japonica From_analysis: WormBase-Compara
      CBOVI.g7656 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9799 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11827 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8004 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20084 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27441 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4405 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10242 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10972 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g11153 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g21711 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5174 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00879.g14715 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ggr-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15972 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00858.g16172 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06001 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005958 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12725 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g908 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20096000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4423 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00265857 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00266992 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog (120)
    Structured_description: Automated_description: Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-56. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA21288
    Corresponding_transcript: PPA21288.1
    Other_sequence: CK854616.1
      HBC05291_1
      ES742712.1
      JI177428.1
      JI181343.1
      EF202570.1
      WBC02107_1
  Experimental_info: Microarray_results: GPL14372_Probes_26328
      GPL14372_Probes_26329
      GPL14372_Probes_81170
  Method: Gene