WormBase Tree Display for Gene: WBGene00025711

WBGene00025711 SMap: S_parent: Sequence: cb25.fpc0058
  Identity: Version: 2
    Name: CGC_name: Cbr-lgc-18 From_analysis: Inferred_from_orthology
      Sequence_name: CBG02706
      Molecular_name: CBG02706
        CBG02706.1
        CBP29269
      Other_name: CBG_02706 Accession_evidence: NDB HE601438
      Public_name: Cbr-lgc-18
    DB_info: Database: NDB locus_tag CBG_02706
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:55 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 15 Oct 2007 15:19:45 WBPerson2970 Name_change: CGC_name: Cbr-lgc-18
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    RNASeq_FPKM: WBls:0000002 0.022402 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.067206 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.016802 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.049138 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0.088641 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.128145 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.059094 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.07797 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.15594 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.047632 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.082222 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 0.058663 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.17599 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.087995 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.277779 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.935127 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.298386 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.082176 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        0.091587 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0.192593 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.293599 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.301166 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.737303 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 0.052246 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.059712 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.067178 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.067344 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.149953 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.027019 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        0.106011 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.33967 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.060302 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.130677 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.170831 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.062506 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.071087 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.125012 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0.067206 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.139688 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.067192 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.146316 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00129127
      00129128
      00129129
      00129130
      00129131
      00129132
    Ortholog: WBGene00011360 Caenorhabditis elegans From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00103670 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00108006 Pristionchus pacificus From_analysis: OMA
      WBGene00053713 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00191904 Caenorhabditis brenneri From_analysis: Inparanoid_8
      CBOVI.g11818 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10142 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g6552 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16600 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17921 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6152 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g15229 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g15230 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12109 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13269 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g13271 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g13272 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g14918 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g26480 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6184 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g6185 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00206.g6984 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00835.g14480 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g6072 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00502.g12182 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_005186 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09580 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13878 Panagrellus redivivus From_analysis: WormBase-Compara
      chrX_pilon.g20197 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (104)
    Structured_description: Automated_description: Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-18. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG02706
    Corresponding_CDS_history: CBG02706:bp194
    Corresponding_transcript: CBG02706.1
  Experimental_info: Expr_pattern: Expr1054186
    Microarray_results: GPL8303_CB6_WBGene00025711_A
      GPL8303_CB6_WBGene00025711_B
      GPL14143_CBG02706_354-413_0.699_77_C
      GPL14143_CBG02706_522-581_0.800_21_A
      GPL14143_CBG02706_912-971_0.717_66_B
  Method: Gene