WormBase Tree Display for Gene: WBGene00022855

WBGene00022855 SMap: S_parent: Sequence: ZK1127
  Identity: Version: 3
    Name: CGC_name: tcer-1 Person_evidence: WBPerson2819
            WBPerson1157
      Sequence_name: ZK1127.9
      Molecular_name (15)
      Other_name: gos-1 Person_evidence: WBPerson2819
        CELE_ZK1127.9 Accession_evidence: NDB BX284602
      Public_name: tcer-1
    DB_info: Database: AceView gene 2H336C
            2H336
        WormQTL gene WBGene00022855
        WormFlux gene WBGene00022855
        NDB locus_tag CELE_ZK1127.9
        Panther gene CAEEL|WormBase=WBGene00022855|UniProtKB=Q95PX7
          family PTHR15377
        NCBI gene 174150
        RefSeq protein NM_001393112.1
            NM_001381486.2
            NM_001393111.1
            NM_001383878.2
        TREEFAM TREEFAM_ID TF317748
        TrEMBL UniProtAcc Q95PX9
            Q86MN9
            Q95PX8
            Q95PX7
        UniProt_GCRP UniProtAcc Q95PX7
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:06 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 01 Sep 2009 13:39:27 WBPerson9133 Name_change: CGC_name: tcer-1
        3 09 Oct 2017 09:36:16 WBPerson2970 Name_change: Other_name: gos-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tcer
    Allele (47)
    Strain: WBStrain00004897
      WBStrain00004899
    RNASeq_FPKM (74)
    GO_annotation: 00083443
      00083444
      00083445
      00087975
      00087976
      00126826
    Ortholog: WBGene00054242 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032371 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00138982 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00120104 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00190922 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00227889 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g7397 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10515 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4419 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1271 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17406 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6305 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10014 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21358 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g22711 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8416 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cnig_chr_II.g5249 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12139 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12140 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00758.g15188 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16967 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006406 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02110 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g19990 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20264700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4916 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrII_pilon.g4917 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247040 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278275 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258046 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302728 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0261641 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-1791 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-101026-4 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:15630 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:23533 Homo sapiens From_analysis: OrthoFinder
            Panther
            PhylomeDB
      MGI:1926421 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1917821 Mus musculus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      RGD:1311748 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00022853 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable RNA polymerase binding activity and transcription coregulator activity. Predicted to be involved in regulation of DNA-templated transcription. Located in nuclear periphery. Expressed in several structures, including germ cell; gonad; hypodermal cell; intestinal cell; and somatic cell. Is an ortholog of human TCERG1 (transcription elongation regulator 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK1127.9a
      ZK1127.9b
      ZK1127.9c
      ZK1127.9d
    Corresponding_CDS_history: ZK1127.9e:wp274
    Corresponding_transcript (7)
    Other_sequence (61)
    Associated_feature: WBsf650203
      WBsf223279
  Experimental_info: RNAi_result (33)
    Expr_pattern: Expr7190
      Expr10747
      Expr12818
      Expr1040111
      Expr1162561
      Expr2017362
      Expr2035499
    Drives_construct (11)
    Construct_product (12)
    Regulate_expr_cluster: WBPaper00049217:TCER-1_downregulated
      WBPaper00049217:TCER-1_upregulated
    Antibody: WBAntibody00001520
    Microarray_results (21)
    Expression_cluster (92)
    Interaction (40)
  Map_info: Map: II Position: 0.349925 Error: 0.00503
    Positive: Positive_clone: ZK1127 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (28)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene