WormBase Tree Display for Gene: WBGene00022460

WBGene00022460 SMap: S_parent: Sequence: Y110A7A
  Identity: Version: 2
    Name: CGC_name: use-1 Person_evidence: WBPerson3132
      Sequence_name: Y110A7A.11
      Molecular_name: Y110A7A.11
        Y110A7A.11.1
        CE34394
      Other_name: CELE_Y110A7A.11 Accession_evidence: NDB BX284601
      Public_name: use-1
    DB_info: Database (10)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Mar 2010 11:10:21 WBPerson2970 Name_change: CGC_name: use-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: use
    Allele (17)
    RNASeq_FPKM (74)
    GO_annotation: 00095265
      00095266
      00095267
      00095268
      00095269
      00095270
      00095271
      00095272
      00095273
      00095274
    Contained_in_operon: CEOP1906
    Ortholog: WBGene00032085 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00069408 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00138864 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137893 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00194235 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00227542 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9212 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5928 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7561 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13122 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10663 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8437 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15366 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13165 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g16396 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17899 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-use-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold542.g3419 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00676.g14306 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12372 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000327 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g17461 Panagrellus redivivus From_analysis: WormBase-Compara
      chrI_pilon.g840 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246065 Onchocerca volvulus From_analysis: WormBase-Compara
      FB:FBgn0035965 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-1015 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:30882 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1914273 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1306660 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Structured_description: Automated_description: Predicted to enable SNAP receptor activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in endoplasmic reticulum. Predicted to be part of SNARE complex. Is an ortholog of human USE1 (unconventional SNARE in the ER 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y110A7A.11
    Corresponding_CDS_history: Y110A7A.11:wp102
    Corresponding_transcript: Y110A7A.11.1
    Other_sequence: CSC01610_1
      FD514725.1
      CJC00925_1
      FG620454.1
      CBC05961_1
    Associated_feature: WBsf643267
      WBsf217620
      WBsf217621
  Experimental_info: RNAi_result (31)
    Expr_pattern: Expr1022332
      Expr1039924
      Expr1158852
      Expr2017931
      Expr2036067
    Drives_construct: WBCnstr00024224
    Construct_product: WBCnstr00024224
    Microarray_results (19)
    Expression_cluster (71)
    Interaction: WBInteraction000417059
      WBInteraction000501182
      WBInteraction000501183
      WBInteraction000502557
      WBInteraction000517649
      WBInteraction000517704
  Map_info: Map: I Position: -0.408734 Error: 0.000531
    Positive: Positive_clone: Y110A7A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031224
    WBPaper00038491
    WBPaper00055090
    WBPaper00062469
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene