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WormBase Tree Display for Gene: WBGene00021873

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Name Class

WBGene00021873SMapS_parentSequenceY54G2A
IdentityVersion2
NameCGC_nameclec-82Person_evidenceWBPerson261
WBPerson655
Sequence_nameY54G2A.8
Molecular_name (6)
Other_nameCELE_Y54G2A.8Accession_evidenceNDBBX284604
Public_nameclec-82
DB_infoDatabaseAceViewgene4D603
WormQTLgeneWBGene00021873
WormFluxgeneWBGene00021873
NDBlocus_tagCELE_Y54G2A.8
PanthergeneCAEEL|WormBase=WBGene00021873|UniProtKB=H2L0R0
familyPTHR23062
NCBIgene177064
RefSeqproteinNM_001392272.1
NM_001028336.4
TREEFAMTREEFAM_IDTF317818
TrEMBLUniProtAccH2L0R0
Q5W7E6
UniProt_GCRPUniProtAccH2L0R0
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
228 Sep 2005 17:40:12WBPerson2970Name_changeCGC_nameclec-82
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (64)
RNASeq_FPKM (74)
GO_annotation00023285
OrthologWBGene00023668Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00025257Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00035982Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WBGene00035983Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00035984Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00040177Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00042755Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00068515Caenorhabditis remaneiFrom_analysisOMA
WBGene00157026Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WBGene00139815Caenorhabditis brenneriFrom_analysisOMA
WBGene00128595Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00078515Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00078514Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00069108Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00079702Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00079693Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00069109Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00074448Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00070855Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00074981Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00071978Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00071976Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00071975Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00081310Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00072125Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00071585Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00081408Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00071578Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00075134Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00072030Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00073115Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00073116Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00082785Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00072740Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00072736Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00083905Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00085429Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00073638Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00086086Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00086095Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00074283Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00073793Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00074232Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00067371Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00067572Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00083550Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00086093Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00078184Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00083053Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00035980Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042757Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CBOVI.g11167Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9529Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP28.g14198Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g14210Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP31.g13538Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP40.g13464Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00001.g58Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_I.g3209Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3355Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3356Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3357Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3358Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3359Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3361Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3398Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3399Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3400Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3401Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3403Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3404Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3405Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3410Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_01519.g21437Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01797.g23201Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02461.g26593Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03253.g29565Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03253.g29566Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03445.g30219Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04066.g31976Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04066.g31977Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_20577Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_24306Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_003353Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_003354Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_003355Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_003356Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrIV_pilon.g9873Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00069986Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00069988Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00069989Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00069990Caenorhabditis remaneiFrom_analysisWormBase-Compara
Paralog (45)
Structured_descriptionAutomated_descriptionInvolved in defense response to Gram-positive bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY54G2A.8a
Y54G2A.8b
Corresponding_CDS_historyY54G2A.8:wp82
Y54G2A.8:wp134
Corresponding_transcriptY54G2A.8a.1
Y54G2A.8b.1
Associated_featureWBsf228063
Experimental_infoRNAi_resultWBRNAi00057473Inferred_automaticallyRNAi_primary
WBRNAi00057472Inferred_automaticallyRNAi_primary
Expr_patternExpr1026991
Expr1160918
Expr2010213
Expr2028454
Drives_constructWBCnstr00024421
Construct_productWBCnstr00024421
Microarray_results (18)
Expression_cluster (187)
Map_infoMapIVPosition-6.73209Error0.000593
PositivePositive_cloneY54G2AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031686
WBPaper00061669
WBPaper00065718
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene