WormBase Tree Display for Gene: WBGene00021872

WBGene00021872 SMap: S_parent: Sequence: Y54G2A
  Identity: Version: 2
    Name: CGC_name: clec-85 Person_evidence: WBPerson261
            WBPerson655
      Sequence_name: Y54G2A.6
      Molecular_name: Y54G2A.6a
        Y54G2A.6a.1
        CE27494
        Y54G2A.6b
        CE48649
        Y54G2A.6b.1
      Other_name: CELE_Y54G2A.6 Accession_evidence: NDB BX284604
      Public_name: clec-85
    DB_info: Database: AceView gene 4D619
        WormQTL gene WBGene00021872
        WormFlux gene WBGene00021872
        NDB locus_tag CELE_Y54G2A.6
        Panther gene CAEEL|WormBase=WBGene00021872|UniProtKB=Q95XX2
          family PTHR23062
        NCBI gene 177068
        RefSeq protein NM_001380115.1
            NM_001383060.2
        TrEMBL UniProtAcc Q95XX2
            U4PAM5
        UniProt_GCRP UniProtAcc Q95XX2
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 28 Sep 2005 17:40:12 WBPerson2970 Name_change: CGC_name: clec-85
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele (146)
    RNASeq_FPKM (74)
    Ortholog: WBGene00024435 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
      WBGene00024436 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
      WBGene00034289 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00146329 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00156592 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00072468 Caenorhabditis remanei From_analysis: Inparanoid_8
      CBOVI.g11167 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9529 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP28.g502 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21727 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3481 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g3482 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15731 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4145 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g9855 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2848 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cang_2012_03_13_00093.g4141 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00276.g8317 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_19773.g26314 Caenorhabditis angaria From_analysis: WormBase-Compara
      chrIV_pilon.g9880 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (44)
    Structured_description: Automated_description: Expressed in intestine. Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54G2A.6a
      Y54G2A.6b
    Corresponding_transcript: Y54G2A.6a.1
      Y54G2A.6b.1
    Other_sequence: CR08189
      CRC04511_1
    Associated_feature: WBsf645853
      WBsf995798
      WBsf1016970
      WBsf228065
  Experimental_info: RNAi_result: WBRNAi00057471 Inferred_automatically: RNAi_primary
      WBRNAi00089356 Inferred_automatically: RNAi_primary
      WBRNAi00089367 Inferred_automatically: RNAi_primary
    Expr_pattern (8)
    Drives_construct: WBCnstr00012199
      WBCnstr00015895
      WBCnstr00018658
    Construct_product: WBCnstr00012199
    Microarray_results (25)
    Expression_cluster (321)
    Interaction: WBInteraction000517587
      WBInteraction000517588
      WBInteraction000517593
      WBInteraction000517594
      WBInteraction000525353
      WBInteraction000525360
      WBInteraction000549820
      WBInteraction000585032
  Map_info: Map: IV Position: -6.72756 Error: 0.000584
    Positive: Positive_clone: Y54G2A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (13)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene